Variant report

Variant	rs28374447
Chromosome Location	chr15:55277370-55277371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1728895	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28393187	1.00[EUR][1000 genomes]
rs28432041	1.00[EUR][1000 genomes]
rs28434270	1.00[EUR][1000 genomes]
rs28463889	1.00[EUR][1000 genomes]
rs28488817	1.00[EUR][1000 genomes]
rs28507208	1.00[EUR][1000 genomes]
rs28515575	1.00[EUR][1000 genomes]
rs28520885	1.00[EUR][1000 genomes]
rs28532860	1.00[EUR][1000 genomes]
rs28555415	1.00[EUR][1000 genomes]
rs28558936	1.00[EUR][1000 genomes]
rs28607734	1.00[EUR][1000 genomes]
rs28613704	1.00[EUR][1000 genomes]
rs28652605	1.00[EUR][1000 genomes]
rs28705017	1.00[EUR][1000 genomes]
rs28735352	1.00[EUR][1000 genomes]
rs7162444	1.00[EUR][1000 genomes]
rs7162698	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv569520	chr15:55170999-55327439	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55277200-55277600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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