Variant report

Variant	rs28377066
Chromosome Location	chr15:33446258-33446259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11072275	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072278	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11631772	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11637738	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591081	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12592365	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17816946	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28507600	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28609827	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4780088	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33438600-33449800	Weak transcription	NHEK	skin
2	chr15:33439000-33447200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:33441000-33447000	Weak transcription	Fetal Thymus	thymus
4	chr15:33441200-33451800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:33442200-33447600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:33442200-33447600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr15:33442600-33448000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:33442800-33447400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:33443800-33447000	Weak transcription	Fetal Kidney	kidney
10	chr15:33443800-33450200	Weak transcription	Fetal Intestine Large	intestine
11	chr15:33444600-33447800	Enhancers	HMEC	breast
12	chr15:33445000-33446400	Weak transcription	Osteobl	bone
13	chr15:33445000-33447000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:33445000-33447200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:33445200-33446400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr15:33445200-33446400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:33445200-33446400	Flanking Active TSS	Placenta	Placenta
18	chr15:33445200-33446600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:33445200-33446600	Active TSS	Rectal Mucosa Donor 31	rectum
20	chr15:33445200-33447000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:33445200-33447400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:33445400-33446800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:33445600-33446800	Enhancers	Primary B cells from cord blood	blood
24	chr15:33445600-33446800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:33445600-33447400	Weak transcription	Brain Angular Gyrus	brain
26	chr15:33445600-33453400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:33445800-33446800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:33446000-33446600	Enhancers	HSMMtube	muscle
29	chr15:33446000-33446800	Enhancers	Lung	lung
30	chr15:33446000-33447000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr15:33446000-33449600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:33446200-33446400	Enhancers	Adipose Nuclei	Adipose
33	chr15:33446200-33446800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:33446200-33447000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr15:33446200-33447000	Flanking Active TSS	HSMM	muscle
36	chr15:33446200-33447400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:33446200-33448200	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links