Variant report

Variant	rs28377121
Chromosome Location	chr4:151092359-151092360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:151092229-151092494	IMR90	lung:	n/a	n/a
2	FOSL2	chr4:151092044-151092445	A549	lung:	n/a	chr4:151092256-151092264 chr4:151092256-151092263 chr4:151092256-151092264
3	FOS	chr4:151092112-151092521	MCF10A-Er-Src	breast:	n/a	chr4:151092256-151092264 chr4:151092256-151092263 chr4:151092256-151092264
4	FOSL2	chr4:151092162-151092407	A549	lung:	n/a	chr4:151092256-151092264 chr4:151092256-151092263 chr4:151092256-151092264
5	STAT3	chr4:151092119-151092375	MCF10A-Er-Src	breast:	n/a	chr4:151092122-151092133 chr4:151092291-151092299
6	FOS	chr4:151092124-151092471	MCF10A-Er-Src	breast:	n/a	chr4:151092256-151092264 chr4:151092256-151092263 chr4:151092256-151092264
7	RPC155	chr4:151092212-151092836	Hela-S3	cervix:	n/a	n/a
8	FOSL2	chr4:151091992-151092579	SK-N-SH	brain:	n/a	chr4:151092256-151092264 chr4:151092256-151092263 chr4:151092256-151092264
9	FOS	chr4:151092144-151092490	MCF10A-Er-Src	breast:	n/a	chr4:151092256-151092264 chr4:151092256-151092263 chr4:151092256-151092264
10	GATA3	chr4:151091952-151092531	A549	lung:	n/a	n/a

Variant related genes	Relation type
DCLK2	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28367564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28417141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28420619	1.00[AMR][1000 genomes]
rs28511881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625200	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9993728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:151074400-151094200	Weak transcription	NH-A	brain
3	chr4:151074600-151094000	Weak transcription	HSMMtube	muscle
4	chr4:151074600-151094600	Weak transcription	HSMM	muscle
5	chr4:151081400-151094200	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:151081400-151096600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:151085400-151094200	Enhancers	Brain Germinal Matrix	brain
8	chr4:151085400-151097400	Weak transcription	Ovary	ovary
9	chr4:151087200-151093000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:151087200-151093800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:151087200-151094600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:151088600-151094000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:151088600-151094000	Weak transcription	Fetal Brain Female	brain
14	chr4:151088600-151094000	Weak transcription	Fetal Stomach	stomach
15	chr4:151088600-151094000	Weak transcription	HUVEC	blood vessel
16	chr4:151088600-151094400	Weak transcription	Right Atrium	heart
17	chr4:151088800-151092600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:151088800-151094000	Weak transcription	Brain Angular Gyrus	brain
19	chr4:151088800-151094000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:151088800-151094200	Weak transcription	Fetal Brain Male	brain
21	chr4:151088800-151094200	Weak transcription	Fetal Lung	lung
22	chr4:151088800-151094200	Weak transcription	Left Ventricle	heart
23	chr4:151088800-151094200	Weak transcription	Right Ventricle	heart
24	chr4:151089000-151094000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:151089000-151094200	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:151089000-151094200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:151089000-151094200	Weak transcription	Lung	lung
28	chr4:151089200-151094200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:151089200-151097000	Weak transcription	Aorta	Aorta
30	chr4:151089800-151094000	Weak transcription	Fetal Heart	heart
31	chr4:151090600-151094000	Weak transcription	Brain Anterior Caudate	brain
32	chr4:151090600-151094200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:151091600-151104800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr4:151092000-151097000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:151092200-151094000	Weak transcription	A549	lung
36	chr4:151092200-151094200	Weak transcription	Osteobl	bone
37	chr4:151092200-151094400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:151092200-151094600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr4:151092200-151096800	Weak transcription	NHDF-Ad	bronchial

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