Variant report

Variant	rs28379782
Chromosome Location	chr4:7900958-7900959
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7896306..7899121-chr4:7899762..7902473,2	MCF-7	breast:
2	chr4:7900242..7903106-chr4:7943268..7945113,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16841255	1.00[AFR][1000 genomes]
rs16841296	1.00[AFR][1000 genomes]
rs4075363	0.88[AMR][1000 genomes]
rs4383619	0.93[ASN][1000 genomes]
rs4552460	0.93[ASN][1000 genomes]
rs4605652	0.93[ASN][1000 genomes]
rs4689871	1.00[AFR][1000 genomes]
rs7376416	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7883200-7904400	Weak transcription	Gastric	stomach
2	chr4:7886800-7904400	Weak transcription	Small Intestine	intestine
3	chr4:7889200-7901200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:7892600-7903800	Weak transcription	Stomach Mucosa	stomach
5	chr4:7893000-7902200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:7893200-7903400	Weak transcription	Fetal Kidney	kidney
7	chr4:7893200-7905600	Weak transcription	Brain Angular Gyrus	brain
8	chr4:7893800-7902600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:7894200-7901000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:7894200-7902000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:7894200-7912400	Weak transcription	Fetal Intestine Large	intestine
12	chr4:7894400-7901000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:7894400-7901000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:7894400-7901400	Weak transcription	Fetal Lung	lung
15	chr4:7894400-7904400	Weak transcription	Left Ventricle	heart
16	chr4:7894400-7906200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:7894600-7901000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:7894600-7902800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:7895000-7901000	Weak transcription	HSMMtube	muscle
20	chr4:7895000-7901200	Weak transcription	HUVEC	blood vessel
21	chr4:7895600-7907600	Weak transcription	Colonic Mucosa	Colon
22	chr4:7896000-7902600	Weak transcription	Aorta	Aorta
23	chr4:7896800-7901000	Weak transcription	HSMM	muscle
24	chr4:7896800-7901200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:7896800-7903000	Weak transcription	Placenta	Placenta
26	chr4:7896800-7903200	Weak transcription	Right Ventricle	heart
27	chr4:7896800-7904400	Weak transcription	Adipose Nuclei	Adipose
28	chr4:7896800-7904400	Weak transcription	Spleen	Spleen
29	chr4:7896800-7907600	Weak transcription	Fetal Intestine Small	intestine
30	chr4:7897000-7902200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:7897000-7902200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:7897000-7902800	Weak transcription	Right Atrium	heart
33	chr4:7897000-7907400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:7897400-7905800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:7897600-7901600	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:7898600-7902600	Enhancers	Brain Germinal Matrix	brain
37	chr4:7898600-7904400	Enhancers	A549	lung
38	chr4:7898800-7901400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:7898800-7902600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:7898800-7905200	Enhancers	Colon Smooth Muscle	Colon
41	chr4:7899000-7901200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr4:7899200-7901000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr4:7899200-7901000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:7899200-7901600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr4:7899200-7905800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr4:7899400-7901800	Enhancers	Osteobl	bone
47	chr4:7899400-7902000	Weak transcription	Fetal Heart	heart
48	chr4:7899400-7903000	Enhancers	Fetal Stomach	stomach
49	chr4:7899600-7901200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:7899600-7901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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