Variant report

Variant	rs28380426
Chromosome Location	chr16:81858136-81858137
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13335168	0.90[AFR][1000 genomes]
rs28546769	0.87[AFR][1000 genomes]
rs28550771	0.92[AFR][1000 genomes]
rs28731296	0.90[AFR][1000 genomes]
rs55833904	0.90[AFR][1000 genomes]
rs56134131	0.90[AFR][1000 genomes]
rs61635216	0.90[AFR][1000 genomes]
rs9922196	0.90[AFR][1000 genomes]
rs9923151	0.89[AFR][1000 genomes]
rs9932427	0.87[AFR][1000 genomes]
rs9933031	0.87[AFR][1000 genomes]
rs9940462	0.87[AFR][1000 genomes]
rs9940492	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1061544	chr16:81834313-81877375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81843200-81858200	Weak transcription	Fetal Intestine Small	intestine
2	chr16:81849000-81858800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr16:81850800-81868200	Weak transcription	Esophagus	oesophagus
4	chr16:81852800-81858200	Weak transcription	Lung	lung
5	chr16:81855200-81858400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr16:81855400-81858200	Weak transcription	Thymus	Thymus
7	chr16:81855600-81865000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr16:81856000-81864800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr16:81856600-81858800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
10	chr16:81856800-81858400	Enhancers	Primary hematopoietic stem cells	blood
11	chr16:81856800-81862400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr16:81857000-81858200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:81857000-81858400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr16:81857200-81860600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr16:81857200-81864600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr16:81857200-81865200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr16:81857200-81866400	Weak transcription	Right Atrium	heart
18	chr16:81857200-81867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr16:81857400-81864400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr16:81857600-81858200	Enhancers	Primary B cells from cord blood	blood
21	chr16:81857600-81858600	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr16:81857600-81862600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr16:81857600-81864400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr16:81857800-81861600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr16:81858000-81858200	Enhancers	Placenta	Placenta
26	chr16:81858000-81858400	Enhancers	Spleen	Spleen
27	chr16:81858000-81860800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr16:81858000-81864800	Genic enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links