Variant report

Variant	rs28380699
Chromosome Location	chr9:96440123-96440124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96420113..96421797-chr9:96439753..96442737,2	MCF-7	breast:
2	chr9:96434785..96437618-chr9:96438061..96441050,2	K562	blood:
3	chr9:96438187..96440623-chr9:96628235..96630777,2	K562	blood:
4	chr9:96434498..96437281-chr9:96438650..96440857,2	MCF-7	breast:
5	chr9:96434785..96437496-chr9:96439550..96441266,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10992822	1.00[AMR][1000 genomes]
rs10992823	1.00[AMR][1000 genomes]
rs10992837	1.00[AMR][1000 genomes]
rs10992859	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1123475	1.00[AMR][1000 genomes]
rs12350725	1.00[AMR][1000 genomes]
rs61301026	1.00[AMR][1000 genomes]
rs7850596	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96412600-96442800	Weak transcription	NHDF-Ad	bronchial
2	chr9:96412600-96445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96412800-96442800	Weak transcription	HMEC	breast
4	chr9:96412800-96443600	Weak transcription	Stomach Mucosa	stomach
5	chr9:96413000-96442000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:96413000-96444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:96413200-96440800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:96413400-96441600	Weak transcription	GM12878-XiMat	blood
9	chr9:96416400-96443400	Weak transcription	HepG2	liver
10	chr9:96424800-96440800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:96426000-96441800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr9:96426200-96442200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:96426400-96441600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:96431400-96441800	Weak transcription	K562	blood
15	chr9:96434200-96441000	Strong transcription	Pancreas	Pancrea
16	chr9:96434600-96441000	Strong transcription	Esophagus	oesophagus
17	chr9:96434600-96442400	Strong transcription	Fetal Intestine Small	intestine
18	chr9:96434600-96443200	Strong transcription	Fetal Stomach	stomach
19	chr9:96434800-96440800	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:96434800-96440800	Strong transcription	Dnd41	blood
21	chr9:96434800-96441400	Strong transcription	Primary T cells from cord blood	blood
22	chr9:96434800-96441400	Strong transcription	Brain Cingulate Gyrus	brain
23	chr9:96434800-96442400	Strong transcription	Placenta	Placenta
24	chr9:96435000-96440400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr9:96435000-96440800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr9:96435000-96440800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:96435000-96440800	Strong transcription	Brain Angular Gyrus	brain
28	chr9:96435000-96440800	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:96435000-96441000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:96435000-96441000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr9:96435000-96441000	Strong transcription	Ovary	ovary
32	chr9:96435000-96441200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:96435000-96441200	Strong transcription	Adipose Nuclei	Adipose
34	chr9:96435000-96441400	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr9:96435000-96441400	Strong transcription	Duodenum Mucosa	Duodenum
36	chr9:96435000-96441400	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr9:96435000-96441600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr9:96435000-96442400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:96435000-96442400	Strong transcription	Thymus	Thymus
40	chr9:96435000-96442600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr9:96435000-96442800	Strong transcription	Fetal Muscle Leg	muscle
42	chr9:96435200-96440200	Strong transcription	Primary B cells from cord blood	blood
43	chr9:96435200-96440400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr9:96435200-96440400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:96435200-96440400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:96435200-96440600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:96435200-96440600	Strong transcription	Brain Hippocampus Middle	brain
48	chr9:96435200-96440800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:96435200-96440800	Strong transcription	Liver	Liver
50	chr9:96435200-96440800	Strong transcription	Brain Inferior Temporal Lobe	brain

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