Variant report

Variant	rs28387177
Chromosome Location	chr2:127439476-127439477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:127437217..127440041-chr2:127447833..127449448,2	K562	blood:
2	chr2:127434549..127436811-chr2:127437779..127440229,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10166038	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13395599	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13398914	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17741655	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28387126	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28387130	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28387137	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28387146	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28387172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28387184	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv583011	chr2:127386211-127489031	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1813823	chr2:127417657-127441005	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv875007	chr2:127426697-127454230	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127417200-127443600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:127422200-127453400	Weak transcription	Colonic Mucosa	Colon
3	chr2:127424200-127451000	Weak transcription	NHLF	lung
4	chr2:127424600-127447600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:127428000-127446400	Weak transcription	NHDF-Ad	bronchial
6	chr2:127429000-127442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:127430800-127444000	Weak transcription	Psoas Muscle	Psoas
8	chr2:127432200-127441400	Weak transcription	Fetal Heart	heart
9	chr2:127432800-127443400	Weak transcription	Thymus	Thymus
10	chr2:127433600-127451400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:127433800-127441000	Weak transcription	GM12878-XiMat	blood
12	chr2:127433800-127452600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:127434000-127441200	Weak transcription	Fetal Lung	lung
14	chr2:127434000-127446200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:127434000-127451000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:127434000-127451000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:127434200-127457200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:127434400-127445400	Strong transcription	Fetal Stomach	stomach
19	chr2:127434800-127439600	Weak transcription	Esophagus	oesophagus
20	chr2:127434800-127441000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:127434800-127453000	Weak transcription	Colon Smooth Muscle	Colon
22	chr2:127434800-127453200	Weak transcription	Placenta	Placenta
23	chr2:127435000-127445800	Weak transcription	Gastric	stomach
24	chr2:127435200-127444600	Weak transcription	Pancreas	Pancrea
25	chr2:127435200-127457400	Weak transcription	Fetal Kidney	kidney
26	chr2:127435400-127441400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr2:127435400-127443200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr2:127435400-127452800	Weak transcription	Fetal Intestine Large	intestine
29	chr2:127435600-127444800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr2:127435800-127440400	Strong transcription	K562	blood
31	chr2:127435800-127444600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:127436000-127440200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:127436000-127443400	Strong transcription	Stomach Smooth Muscle	stomach
34	chr2:127436000-127444600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:127436400-127443000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr2:127436400-127444200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr2:127436600-127439600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr2:127436600-127442000	Strong transcription	Primary T cells from cord blood	blood
39	chr2:127436600-127446000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:127436800-127440800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:127436800-127441200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:127436800-127446000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr2:127437000-127442800	Weak transcription	Fetal Thymus	thymus
44	chr2:127437200-127441800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:127437200-127443600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr2:127437600-127443600	Strong transcription	Fetal Muscle Leg	muscle
47	chr2:127437600-127445000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr2:127437800-127441800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr2:127437800-127444400	Strong transcription	Primary hematopoietic stem cells	blood
50	chr2:127437800-127444600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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