Variant report

Variant	rs28393220
Chromosome Location	chr8:20034374-20034375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:20034134-20034489	MCF10A-Er-Src	breast:	n/a	chr8:20034266-20034273

Variant related genes	Relation type
SLC18A1	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10102445	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10108611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10283363	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28494669	0.84[ASN][1000 genomes]
rs28520251	0.84[ASN][1000 genomes]
rs28577098	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28581346	0.85[ASN][1000 genomes]
rs28609982	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28628307	0.85[ASN][1000 genomes]
rs3757961	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56175051	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59372740	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73669729	0.84[ASN][1000 genomes]
rs73669731	0.85[ASN][1000 genomes]
rs73669732	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73669733	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73669734	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73669735	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73669739	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs952860	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1015598	chr8:19963102-20088510	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv539523	chr8:19963102-20088510	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20017400-20040800	Weak transcription	Fetal Intestine Small	intestine
2	chr8:20019800-20038200	Weak transcription	Fetal Intestine Large	intestine

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