Variant report

Variant	rs28396149
Chromosome Location	chr19:36691735-36691736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36690805..36693651-chr19:36696713..36700179,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11882451	1.00[EUR][1000 genomes]
rs12327673	1.00[EUR][1000 genomes]
rs17885104	1.00[EUR][1000 genomes]
rs28812837	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7248312	1.00[EUR][1000 genomes]
rs7248820	1.00[EUR][1000 genomes]
rs7249613	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36669600-36704800	Weak transcription	Psoas Muscle	Psoas
2	chr19:36673800-36704800	Weak transcription	Fetal Kidney	kidney
3	chr19:36674000-36704800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:36674400-36704600	Weak transcription	Fetal Brain Male	brain
5	chr19:36674600-36704600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:36674600-36704600	Weak transcription	HMEC	breast
7	chr19:36674600-36704600	Weak transcription	NH-A	brain
8	chr19:36674600-36704600	Weak transcription	NHEK	skin
9	chr19:36674600-36704800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr19:36674800-36694400	Weak transcription	Fetal Heart	heart
11	chr19:36682600-36705000	Weak transcription	Small Intestine	intestine
12	chr19:36685200-36704800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr19:36685400-36704600	Weak transcription	HSMM	muscle
14	chr19:36685800-36699400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:36685800-36704600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr19:36685800-36704800	Weak transcription	Colon Smooth Muscle	Colon
17	chr19:36686000-36692000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr19:36686000-36692000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr19:36686000-36692000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr19:36686000-36692000	Weak transcription	Right Ventricle	heart
21	chr19:36686000-36692200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr19:36686000-36692600	Weak transcription	Esophagus	oesophagus
23	chr19:36686000-36692600	Weak transcription	Lung	lung
24	chr19:36686000-36692600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr19:36686000-36695800	Weak transcription	Ovary	ovary
26	chr19:36686000-36697000	Weak transcription	Aorta	Aorta
27	chr19:36686000-36697800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr19:36686000-36698800	Weak transcription	Brain Anterior Caudate	brain
29	chr19:36686000-36702800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:36686000-36703800	Weak transcription	Dnd41	blood
31	chr19:36686000-36704000	Weak transcription	Pancreas	Pancrea
32	chr19:36686000-36704600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr19:36686000-36704600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr19:36686000-36704600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr19:36686000-36704600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr19:36686000-36704600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr19:36686000-36704600	Weak transcription	Colonic Mucosa	Colon
38	chr19:36686000-36704600	Weak transcription	Gastric	stomach
39	chr19:36686000-36704600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr19:36686000-36704600	Weak transcription	Spleen	Spleen
41	chr19:36686000-36704600	Weak transcription	Osteobl	bone
42	chr19:36686000-36704800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:36686000-36704800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr19:36686000-36704800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr19:36686000-36704800	Weak transcription	Placenta	Placenta
46	chr19:36686000-36704800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr19:36686000-36704800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr19:36686000-36704800	Weak transcription	Thymus	Thymus
49	chr19:36686200-36691800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr19:36686200-36691800	Weak transcription	Liver	Liver

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