Variant report

Variant	rs28399560
Chromosome Location	chr8:95904243-95904244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10090286	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv891203	chr8:95883232-95948202	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv891204	chr8:95883232-95965135	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv971685	chr8:95903266-95905138	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95837000-95905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:95838200-95905600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:95839400-95904400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:95870200-95905200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:95870600-95905600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:95874400-95904600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:95875600-95904400	Strong transcription	Fetal Thymus	thymus
8	chr8:95876200-95906600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:95879200-95906600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:95881200-95905800	Weak transcription	Spleen	Spleen
11	chr8:95882200-95906600	Weak transcription	Gastric	stomach
12	chr8:95883400-95905600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:95883600-95905600	Weak transcription	Small Intestine	intestine
14	chr8:95886000-95905600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:95886000-95906400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:95887200-95904600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:95887600-95906200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:95888200-95906600	Weak transcription	Ovary	ovary
19	chr8:95890000-95906200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:95890200-95906600	Weak transcription	Lung	lung
21	chr8:95890600-95906800	Weak transcription	Aorta	Aorta
22	chr8:95890800-95905800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:95890800-95905800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr8:95890800-95905800	Weak transcription	Psoas Muscle	Psoas
25	chr8:95891000-95906600	Weak transcription	Left Ventricle	heart
26	chr8:95891400-95905400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr8:95891400-95905600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:95891600-95904800	Weak transcription	Fetal Heart	heart
29	chr8:95891800-95905800	Weak transcription	Esophagus	oesophagus
30	chr8:95891800-95906000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr8:95892400-95906400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr8:95893600-95905800	Weak transcription	HepG2	liver
33	chr8:95893800-95906000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr8:95894000-95905200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr8:95894000-95905600	Weak transcription	Primary T cells from cord blood	blood
36	chr8:95894000-95905600	Weak transcription	NHLF	lung
37	chr8:95894000-95905800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr8:95894000-95905800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr8:95894000-95906200	Weak transcription	Fetal Kidney	kidney
40	chr8:95894400-95905600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr8:95894600-95905600	Weak transcription	Placenta	Placenta
42	chr8:95894800-95905400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr8:95894800-95905600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr8:95894800-95905600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr8:95894800-95905800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr8:95894800-95905800	Weak transcription	Colon Smooth Muscle	Colon
47	chr8:95894800-95905800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr8:95894800-95906000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr8:95894800-95906400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr8:95895000-95905600	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links