Variant report

Variant	rs28399602
Chromosome Location	chr19:45313117-45313118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:45311112-45313551	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:45250785..45254453-chr19:45309921..45313662,4	MCF-7	breast:
2	chr19:45308884..45313334-chr19:45345353..45351688,18	MCF-7	breast:
3	chr19:45249129..45253567-chr19:45309146..45313529,6	MCF-7	breast:

Variant related genes	Relation type
BCAM	TF binding region
ENSG00000069399	Chromatin interaction
ENSG00000130202	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912117	chr19:45298069-45322744	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv912118	chr19:45300056-45326664	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv912119	chr19:45304307-45317089	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv912120	chr19:45304307-45317469	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv912121	chr19:45304307-45319297	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv912122	chr19:45304307-45324516	Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv579861	chr19:45309972-45314395	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv912123	chr19:45310319-45314395	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv579862	chr19:45310319-45316807	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
10	nsv912124	chr19:45310319-45318564	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv912125	chr19:45310319-45321841	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv579863	chr19:45310319-45322451	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
13	nsv912126	chr19:45311523-45317089	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	nsv912127	chr19:45312114-45316807	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
15	nsv912128	chr19:45312114-45321841	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45311400-45313600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr19:45311400-45314200	Active TSS	Fetal Kidney	kidney
3	chr19:45311800-45313200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr19:45311800-45313600	Active TSS	Aorta	Aorta
5	chr19:45311800-45313600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr19:45311800-45313600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr19:45311800-45314200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr19:45311800-45314400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr19:45312000-45313200	Active TSS	Fetal Heart	heart
10	chr19:45312000-45313200	Active TSS	Psoas Muscle	Psoas
11	chr19:45312000-45313800	Active TSS	Right Atrium	heart
12	chr19:45312200-45313200	Active TSS	Lung	lung
13	chr19:45312200-45314000	Active TSS	HSMMtube	muscle
14	chr19:45312400-45314000	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr19:45312400-45314000	Flanking Active TSS	Fetal Muscle Trunk	muscle
16	chr19:45312400-45314000	Flanking Active TSS	Fetal Muscle Leg	muscle
17	chr19:45312400-45314000	Flanking Active TSS	NHEK	skin
18	chr19:45312600-45313200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr19:45312600-45313200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr19:45312600-45313400	Bivalent/Poised TSS	HepG2	liver
21	chr19:45312600-45313600	Flanking Active TSS	Fetal Stomach	stomach
22	chr19:45312600-45313600	Flanking Active TSS	Ovary	ovary
23	chr19:45312600-45314200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr19:45312800-45313200	Active TSS	Esophagus	oesophagus
25	chr19:45312800-45313200	Active TSS	Right Ventricle	heart
26	chr19:45312800-45313200	Active TSS	HMEC	breast
27	chr19:45312800-45313400	Active TSS	Brain Angular Gyrus	brain
28	chr19:45312800-45313400	Bivalent Enhancer	Fetal Brain Male	brain
29	chr19:45312800-45313400	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr19:45312800-45313600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr19:45312800-45313600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:45312800-45313600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr19:45312800-45313600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr19:45312800-45313600	Enhancers	Colon Smooth Muscle	Colon
35	chr19:45312800-45313600	Enhancers	Osteobl	bone
36	chr19:45312800-45314000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr19:45312800-45314200	Enhancers	Spleen	Spleen
38	chr19:45313000-45313200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
39	chr19:45313000-45313200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
40	chr19:45313000-45313200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr19:45313000-45313200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
42	chr19:45313000-45313200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr19:45313000-45313200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
44	chr19:45313000-45313200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr19:45313000-45313200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr19:45313000-45313200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr19:45313000-45313200	Enhancers	Brain Anterior Caudate	brain
48	chr19:45313000-45313200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr19:45313000-45313200	Enhancers	Fetal Intestine Large	intestine
50	chr19:45313000-45313200	Active TSS	Fetal Intestine Small	intestine

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