Variant report

Variant	rs28401278
Chromosome Location	chr7:80730111-80730112
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80571523..80573268-chr7:80727858..80730122,2	MCF-7	breast:
2	chr7:80545597..80550139-chr7:80727940..80730793,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10225640	0.82[AFR][1000 genomes]
rs10234328	0.81[AFR][1000 genomes]
rs10245648	0.81[EUR][1000 genomes]
rs10265624	0.81[ASN][1000 genomes]
rs13227671	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2697221	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2697224	0.81[EUR][1000 genomes]
rs2697225	0.81[EUR][1000 genomes]
rs28536573	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28627226	0.81[ASN][1000 genomes]
rs35758038	0.81[AFR][1000 genomes]
rs3891957	0.81[AFR][1000 genomes]
rs3891958	0.81[AFR][1000 genomes]
rs4732107	0.81[AFR][1000 genomes]
rs4732109	0.81[AFR][1000 genomes]
rs6951995	0.84[AFR][1000 genomes]
rs6955164	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6957232	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6959189	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6969190	0.83[AFR][1000 genomes]
rs6973162	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs953191	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888552	chr7:80683308-80755310	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv888554	chr7:80695828-80755310	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv888555	chr7:80695828-80766407	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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