Variant report

Variant	rs28401457
Chromosome Location	chr5:178328541-178328542
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6600995	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178328600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:178323600-178331200	Weak transcription	Pancreas	Pancrea
3	chr5:178323600-178332800	Weak transcription	Left Ventricle	heart
4	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:178323800-178329000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:178323800-178329600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:178323800-178329800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:178323800-178331000	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:178323800-178332800	Weak transcription	Placenta	Placenta
10	chr5:178323800-178332800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:178323800-178333800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
13	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:178324000-178332800	Weak transcription	Brain Angular Gyrus	brain
15	chr5:178324000-178332800	Weak transcription	Brain Anterior Caudate	brain
16	chr5:178325800-178332800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:178326000-178328600	Weak transcription	Fetal Stomach	stomach
18	chr5:178326200-178328800	ZNF genes & repeats	Fetal Brain Female	brain
19	chr5:178327800-178328600	ZNF genes & repeats	Fetal Brain Male	brain
20	chr5:178328000-178328600	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr5:178328000-178330400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:178328000-178330400	ZNF genes & repeats	Fetal Lung	lung
23	chr5:178328000-178334400	Weak transcription	Psoas Muscle	Psoas
24	chr5:178328200-178328600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:178328200-178328600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr5:178328200-178328600	ZNF genes & repeats	Aorta	Aorta
27	chr5:178328200-178328600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
28	chr5:178328200-178328600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
29	chr5:178328200-178328600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
30	chr5:178328200-178328600	ZNF genes & repeats	Gastric	stomach
31	chr5:178328200-178328800	ZNF genes & repeats	Ovary	ovary
32	chr5:178328200-178329200	ZNF genes & repeats	Fetal Muscle Leg	muscle
33	chr5:178328200-178330200	ZNF genes & repeats	Liver	Liver
34	chr5:178328400-178328600	ZNF genes & repeats	Brain Substantia Nigra	brain
35	chr5:178328400-178328600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links