Variant report

Variant	rs28402381
Chromosome Location	chr9:97399708-97399709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10761347	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761348	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10993267	0.82[AFR][1000 genomes]
rs10993271	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10993276	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1410972	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4129220	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744360	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4744363	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6479561	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025121	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031924	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7041301	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041595	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
2	chr9:97381400-97400400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:97381600-97401000	Weak transcription	Right Atrium	heart
4	chr9:97394000-97400600	Weak transcription	Small Intestine	intestine
5	chr9:97394200-97400800	Weak transcription	Adipose Nuclei	Adipose
6	chr9:97395200-97401000	Weak transcription	Colonic Mucosa	Colon
7	chr9:97395400-97399800	Weak transcription	Pancreas	Pancrea
8	chr9:97395600-97400400	Weak transcription	Stomach Mucosa	stomach
9	chr9:97395800-97400800	Weak transcription	Gastric	stomach
10	chr9:97396000-97400400	Weak transcription	Fetal Intestine Large	intestine
11	chr9:97398000-97400200	Flanking Active TSS	Liver	Liver
12	chr9:97398600-97400000	Weak transcription	Fetal Intestine Small	intestine
13	chr9:97399400-97400400	Active TSS	Duodenum Mucosa	Duodenum
14	chr9:97399400-97400400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr9:97399400-97400600	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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