Variant report

Variant	rs28402410
Chromosome Location	chr9:97393142-97393143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97375440..97378542-chr9:97391725..97394611,4	MCF-7	breast:
2	chr9:97315886..97317442-chr9:97390408..97393191,2	MCF-7	breast:
3	chr9:97373691..97376847-chr9:97393054..97396710,3	MCF-7	breast:
4	chr9:97389746..97395320-chr9:97854192..97858136,7	MCF-7	breast:
5	chr9:97360979..97363553-chr9:97393005..97395544,2	MCF-7	breast:
6	chr9:97388894..97390438-chr9:97391707..97394156,2	K562	blood:
7	chr9:97391705..97394418-chr9:97757936..97760772,2	MCF-7	breast:
8	chr9:97389422..97393205-chr9:97411609..97416128,4	MCF-7	breast:
9	chr9:97392176..97395070-chr9:97431603..97433493,2	MCF-7	breast:
10	chr9:97368983..97370788-chr9:97391157..97393414,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000231806	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35600708	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
2	chr9:97374600-97393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:97381400-97400400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:97381600-97401000	Weak transcription	Right Atrium	heart
5	chr9:97382800-97399400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr9:97387600-97393200	Weak transcription	Fetal Stomach	stomach
7	chr9:97389800-97393400	Enhancers	Liver	Liver
8	chr9:97390000-97394200	Enhancers	Stomach Mucosa	stomach
9	chr9:97390000-97397600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr9:97390200-97393200	Genic enhancers	Fetal Intestine Small	intestine
11	chr9:97391600-97394000	Enhancers	Duodenum Mucosa	Duodenum
12	chr9:97391800-97393400	Enhancers	Gastric	stomach
13	chr9:97391800-97395400	Enhancers	Pancreas	Pancrea
14	chr9:97391800-97396000	Enhancers	Fetal Intestine Large	intestine
15	chr9:97392000-97393800	Bivalent Enhancer	HepG2	liver
16	chr9:97392000-97395400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:97392400-97395000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:97392600-97394000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:97392600-97394400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr9:97392600-97394400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr9:97392600-97394600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr9:97392600-97395200	Enhancers	Colonic Mucosa	Colon
23	chr9:97392600-97395200	Enhancers	NHEK	skin
24	chr9:97392800-97393200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:97392800-97394200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr9:97392800-97394200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr9:97392800-97394200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:97392800-97394600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr9:97392800-97395200	Enhancers	Fetal Lung	lung
30	chr9:97392800-97395200	Enhancers	Lung	lung
31	chr9:97392800-97395600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:97393000-97393600	Enhancers	Hela-S3	cervix
33	chr9:97393000-97393800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:97393000-97393800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:97393000-97393800	Weak transcription	Esophagus	oesophagus
36	chr9:97393000-97394000	Enhancers	Small Intestine	intestine
37	chr9:97393000-97394200	Enhancers	Adipose Nuclei	Adipose
38	chr9:97393000-97394400	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr9:97393000-97395000	Enhancers	Rectal Mucosa Donor 29	rectum

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