Variant report

Variant	rs28402803
Chromosome Location	chr7:84503780-84503781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10216037	0.83[AFR][1000 genomes]
rs10227790	0.83[AFR][1000 genomes]
rs10234337	0.83[AFR][1000 genomes]
rs10238552	0.83[AFR][1000 genomes]
rs10238803	0.83[AFR][1000 genomes]
rs10247729	0.83[AFR][1000 genomes]
rs10248781	0.83[AFR][1000 genomes]
rs10249004	0.83[AFR][1000 genomes]
rs10253650	0.83[AFR][1000 genomes]
rs10254645	0.83[AFR][1000 genomes]
rs10254905	0.83[AFR][1000 genomes]
rs10256709	0.83[AFR][1000 genomes]
rs10256725	0.83[AFR][1000 genomes]
rs10256947	0.83[AFR][1000 genomes]
rs10257324	0.83[AFR][1000 genomes]
rs10258219	0.83[AFR][1000 genomes]
rs10258244	0.83[AFR][1000 genomes]
rs10264103	0.83[AFR][1000 genomes]
rs10273523	0.83[AFR][1000 genomes]
rs10275794	0.83[AFR][1000 genomes]
rs1430595	0.83[AFR][1000 genomes]
rs1830384	0.83[AFR][1000 genomes]
rs1830385	0.83[AFR][1000 genomes]
rs1830386	0.83[AFR][1000 genomes]
rs28366993	0.83[AFR][1000 genomes]
rs28379695	0.83[AFR][1000 genomes]
rs28412718	0.83[AFR][1000 genomes]
rs28428821	0.83[AFR][1000 genomes]
rs28450350	0.83[AFR][1000 genomes]
rs28451585	0.83[AFR][1000 genomes]
rs28618178	0.83[AFR][1000 genomes]
rs28648964	0.83[AFR][1000 genomes]
rs28715185	0.83[AFR][1000 genomes]
rs57698546	0.83[AFR][1000 genomes]
rs58279956	0.83[AFR][1000 genomes]
rs9655926	0.83[AFR][1000 genomes]
rs9655927	0.83[AFR][1000 genomes]
rs9886001	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84491400-84504400	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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