Variant report

Variant	rs28404149
Chromosome Location	chr4:147298708-147298709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147277196..147280652-chr4:147297351..147300192,3	K562	blood:
2	chr4:147298326..147300509-chr4:147303164..147305825,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10000604	0.95[ASN][1000 genomes]
rs10020390	0.93[ASN][1000 genomes]
rs10027855	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031151	0.95[ASN][1000 genomes]
rs10032409	0.98[ASN][1000 genomes]
rs11100924	0.95[ASN][1000 genomes]
rs11721629	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725876	0.95[ASN][1000 genomes]
rs11930791	0.95[ASN][1000 genomes]
rs17021440	0.95[ASN][1000 genomes]
rs2630295	0.95[ASN][1000 genomes]
rs2630305	0.91[ASN][1000 genomes]
rs2679141	0.93[ASN][1000 genomes]
rs28611450	0.98[ASN][1000 genomes]
rs3849035	0.95[ASN][1000 genomes]
rs4835035	0.98[ASN][1000 genomes]
rs4835304	0.95[ASN][1000 genomes]
rs55844140	0.95[ASN][1000 genomes]
rs6537418	0.95[ASN][1000 genomes]
rs6826676	0.91[ASN][1000 genomes]
rs6841790	0.98[ASN][1000 genomes]
rs6843145	0.95[ASN][1000 genomes]
rs6858794	0.93[ASN][1000 genomes]
rs72729847	0.98[ASN][1000 genomes]
rs72729852	0.95[ASN][1000 genomes]
rs9999381	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1033640	chr4:147232217-147531881	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv917053	chr4:147265436-147499653	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023868	chr4:147265443-147531626	Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv537293	chr4:147265443-147531626	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147277400-147314200	Weak transcription	Left Ventricle	heart
2	chr4:147283000-147332200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:147291800-147300400	Weak transcription	Stomach Mucosa	stomach
4	chr4:147296400-147300200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:147297800-147298800	Enhancers	NHEK	skin
6	chr4:147298000-147298800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:147298400-147298800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:147298400-147298800	Enhancers	Esophagus	oesophagus
9	chr4:147298600-147302400	Weak transcription	GM12878-XiMat	blood

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