Variant report

Variant	rs28405320
Chromosome Location	chr14:68887181-68887182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68885394..68888226-chr14:69257512..69260441,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10130220	0.81[ASN][1000 genomes]
rs11849044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17755657	0.81[AMR][1000 genomes]
rs7359088	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:68877200-68890600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:68881000-68890600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68881400-68887400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:68882200-68890000	Weak transcription	Small Intestine	intestine
6	chr14:68882400-68893400	Weak transcription	Fetal Intestine Small	intestine
7	chr14:68883400-68888200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:68884000-68890200	Weak transcription	Primary B cells from cord blood	blood
9	chr14:68884200-68890800	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:68884600-68887200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:68885200-68893600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:68885400-68887200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:68885600-68888000	Enhancers	Primary T cells from cord blood	blood
14	chr14:68885800-68887200	Weak transcription	Fetal Lung	lung
15	chr14:68885800-68887400	Weak transcription	Fetal Heart	heart
16	chr14:68885800-68889600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:68886000-68887200	Weak transcription	Fetal Kidney	kidney
18	chr14:68886000-68890600	Weak transcription	Fetal Muscle Leg	muscle
19	chr14:68886200-68888200	Enhancers	Spleen	Spleen
20	chr14:68886200-68894800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:68886400-68887400	Enhancers	GM12878-XiMat	blood
22	chr14:68886600-68887600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr14:68886600-68887800	Weak transcription	Ovary	ovary
24	chr14:68886600-68890000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:68887000-68887200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:68887000-68887400	Enhancers	Stomach Smooth Muscle	stomach
28	chr14:68887000-68888400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links