The 2.0 version of rSNPBase

Variant report

Variant rs28405812
Chromosome Location chr18:29903752-29903753
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29868200-29923800 Weak transcription Gastric stomach
2 chr18:29889400-29904200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr18:29890400-29904000 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr18:29891000-29905800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr18:29891000-29914000 Weak transcription Fetal Brain Female brain
6 chr18:29891200-29905600 Weak transcription Rectal Smooth Muscle rectum
7 chr18:29897200-29918800 Weak transcription Fetal Intestine Large intestine
8 chr18:29897200-29926400 Weak transcription Fetal Stomach stomach
9 chr18:29897400-29909000 Weak transcription Left Ventricle heart
10 chr18:29897400-29923800 Weak transcription Esophagus oesophagus
11 chr18:29897400-29923800 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr18:29898000-29906000 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr18:29898000-29906400 Weak transcription Small Intestine intestine
14 chr18:29898000-29906600 Weak transcription Brain Angular Gyrus brain
15 chr18:29898000-29918600 Weak transcription Fetal Intestine Small intestine
16 chr18:29898200-29915400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr18:29898400-29903800 Weak transcription Fetal Kidney kidney
18 chr18:29898400-29904000 Weak transcription Brain Anterior Caudate brain
19 chr18:29898600-29904000 Weak transcription Brain Cingulate Gyrus brain
20 chr18:29898800-29904000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr18:29898800-29904000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr18:29898800-29904000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr18:29898800-29904000 Weak transcription Fetal Lung lung
24 chr18:29898800-29904000 Weak transcription Osteobl bone
25 chr18:29899000-29904000 Weak transcription Stomach Smooth Muscle stomach
26 chr18:29899000-29904000 Weak transcription NHDF-Ad bronchial
27 chr18:29899200-29903800 Weak transcription HSMM muscle
28 chr18:29899200-29904000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr18:29899200-29904000 Weak transcription Muscle Satellite Cultured Cells --
30 chr18:29899200-29904000 Weak transcription Brain Substantia Nigra brain
31 chr18:29899400-29905600 Weak transcription Brain Inferior Temporal Lobe brain
32 chr18:29899600-29904000 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr18:29899800-29903800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr18:29899800-29908400 Weak transcription Stomach Mucosa stomach
35 chr18:29900000-29905800 Weak transcription Liver Liver
36 chr18:29900000-29906000 Weak transcription Fetal Heart heart
37 chr18:29901800-29904000 Enhancers Fetal Muscle Leg muscle
38 chr18:29902000-29904000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr18:29902400-29905200 Weak transcription HepG2 liver
40 chr18:29902600-29907400 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr18:29902800-29905600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr18:29903000-29904000 Enhancers Adipose Nuclei Adipose
43 chr18:29903200-29904200 Enhancers Pancreas Pancrea
44 chr18:29903200-29904800 Enhancers Cortex derived primary cultured neurospheres brain
45 chr18:29903400-29903800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr18:29903400-29903800 Weak transcription Brain Hippocampus Middle brain
47 chr18:29903400-29903800 Weak transcription HSMMtube muscle
48 chr18:29903400-29904000 Enhancers Ovary ovary
49 chr18:29903400-29904200 Enhancers Fetal Muscle Trunk muscle
50 chr18:29903400-29915800 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015