Variant report

Variant	rs28406105
Chromosome Location	chr9:98195365-98195366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98195063..98197090-chr9:98200998..98203192,2	K562	blood:
2	chr9:98194162..98198925-chr9:98199539..98203355,6	K562	blood:
3	chr9:98174229..98176138-chr9:98194675..98196475,2	K562	blood:
4	chr9:98192831..98199026-chr9:98270440..98274596,9	K562	blood:
5	chr9:98184923..98187907-chr9:98195296..98197240,2	K562	blood:
6	chr9:98193214..98197304-chr9:98277800..98280363,5	K562	blood:
7	chr9:98195217..98199748-chr9:98266921..98269670,5	K562	blood:
8	chr9:98195217..98198103-chr9:98267041..98269977,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10993530	0.81[ASN][1000 genomes]
rs28454710	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28522014	0.82[ASN][1000 genomes]
rs57585041	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1051731	chr9:98154815-98201115	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98189400-98196600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr9:98189400-98197400	Weak transcription	Brain Hippocampus Middle	brain
3	chr9:98189600-98196400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:98189600-98210800	Weak transcription	Right Atrium	heart
5	chr9:98189800-98206600	Weak transcription	Pancreas	Pancrea
6	chr9:98193200-98195600	Weak transcription	K562	blood
7	chr9:98193200-98196600	Weak transcription	Fetal Lung	lung
8	chr9:98193400-98196800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:98193800-98197800	Enhancers	Fetal Heart	heart
10	chr9:98194600-98195800	Weak transcription	Brain Germinal Matrix	brain
11	chr9:98194800-98196600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:98194800-98206600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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