Variant report

Variant	rs2840796
Chromosome Location	chr6:73571223-73571224
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1125083	0.94[CEU][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs1539335	0.96[EUR][1000 genomes]
rs2350089	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs2796003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9283796	0.83[CHB][hapmap]
rs9446790	0.82[CHB][hapmap]
rs9986400	0.86[CHB][hapmap]
rs9986437	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73566800-73571600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:73567800-73571600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:73567800-73571600	Weak transcription	HMEC	breast
5	chr6:73568200-73571400	Weak transcription	NH-A	brain
6	chr6:73568200-73571600	Weak transcription	NHEK	skin
7	chr6:73569600-73575600	Enhancers	HSMMtube	muscle
8	chr6:73569800-73571800	Enhancers	HSMM	muscle
9	chr6:73569800-73572600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:73569800-73573200	Enhancers	HUVEC	blood vessel
11	chr6:73570000-73572000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:73570000-73573200	Enhancers	Osteobl	bone
13	chr6:73570200-73573200	Enhancers	NHLF	lung
14	chr6:73570400-73571800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:73570400-73572200	Enhancers	Fetal Heart	heart
16	chr6:73570400-73572400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:73570400-73573200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:73570400-73576600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:73570600-73571800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:73570600-73572000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:73570600-73572400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:73570600-73573200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:73570800-73572600	Enhancers	Aorta	Aorta
24	chr6:73571000-73571400	Enhancers	Psoas Muscle	Psoas
25	chr6:73571000-73572000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:73571000-73572000	Enhancers	Brain Anterior Caudate	brain
27	chr6:73571000-73572600	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:73571000-73572600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:73571000-73572600	Enhancers	Colon Smooth Muscle	Colon
30	chr6:73571000-73572600	Enhancers	NHDF-Ad	bronchial
31	chr6:73571000-73572800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:73571000-73573200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:73571000-73576200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:73571200-73571400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr6:73571200-73571600	Enhancers	Brain Substantia Nigra	brain
36	chr6:73571200-73572000	Enhancers	Brain Cingulate Gyrus	brain
37	chr6:73571200-73572600	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr6:73571200-73572600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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