Variant report

Variant	rs28408312
Chromosome Location	chr4:10673625-10673626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:10673504..10675348-chr4:10684233..10687077,2	K562	blood:

Variant related genes	Relation type
ENSG00000109684	Chromatin interaction
ENSG00000249334	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10938924	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11731409	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502030	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13116161	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13126545	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13126573	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4302458	0.91[ASN][1000 genomes]
rs4323097	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4352469	0.91[ASN][1000 genomes]
rs4386600	0.81[AMR][1000 genomes]
rs4458449	0.91[ASN][1000 genomes]
rs4697767	0.85[ASN][1000 genomes]
rs4697768	0.86[ASN][1000 genomes]
rs4697772	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6814902	0.91[ASN][1000 genomes]
rs6825032	0.91[ASN][1000 genomes]
rs9684998	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
4	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
5	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
6	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
7	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
8	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
9	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
10	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
11	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
12	nsv593727	chr4:10397327-10694991	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv517971	chr4:10399068-10893253	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv878694	chr4:10407572-10783606	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv878697	chr4:10501373-10831866	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	nsv829860	chr4:10598743-10764854	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10671800-10674400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:10672000-10674000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:10672000-10674600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr4:10672000-10674600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr4:10672000-10674600	Enhancers	Fetal Thymus	thymus
6	chr4:10672000-10674800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr4:10672000-10674800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:10672000-10676000	Enhancers	Primary T cells from cord blood	blood
9	chr4:10672000-10676000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:10672200-10674800	Enhancers	Primary hematopoietic stem cells	blood
11	chr4:10672400-10674000	Enhancers	Primary B cells from cord blood	blood
12	chr4:10672400-10674600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr4:10672400-10674800	Enhancers	Thymus	Thymus
14	chr4:10672600-10674000	Enhancers	Primary B cells from peripheral blood	blood
15	chr4:10673000-10673800	Flanking Active TSS	GM12878-XiMat	blood
16	chr4:10673200-10674000	Enhancers	Dnd41	blood
17	chr4:10673200-10674200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:10673400-10673800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr4:10673400-10673800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr4:10673400-10674000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:10673400-10674600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr4:10673400-10674800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:10673600-10674000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:10673600-10674000	Enhancers	Gastric	stomach

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