Variant report

Variant	rs28409184
Chromosome Location	chr12:10270000-10270001
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10269375..10271962-chr12:10282680..10284395,2	K562	blood:

Variant related genes	Relation type
ENSG00000172243	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10845046	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10845047	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10845048	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10845050	0.88[ASN][1000 genomes]
rs11053591	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11053592	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053593	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11053595	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11053597	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053598	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053602	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053603	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053604	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053605	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053607	0.88[ASN][1000 genomes]
rs11053609	0.88[ASN][1000 genomes]
rs11053613	0.88[ASN][1000 genomes]
rs11053615	0.88[ASN][1000 genomes]
rs11053617	0.88[ASN][1000 genomes]
rs11053618	0.88[ASN][1000 genomes]
rs12304716	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16910526	0.80[EUR][1000 genomes]
rs28391155	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55682899	0.88[ASN][1000 genomes]
rs56140555	0.88[ASN][1000 genomes]
rs56155255	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56371657	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58924693	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59051690	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59388877	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59913193	0.88[ASN][1000 genomes]
rs7136680	0.86[ASN][1000 genomes]
rs7137840	0.88[ASN][1000 genomes]
rs7309870	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10264200-10275600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:10264600-10281000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr12:10267800-10270800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr12:10268000-10271000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:10268000-10271600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:10268800-10278800	Weak transcription	Spleen	Spleen
7	chr12:10269400-10271800	Weak transcription	Primary hematopoietic stem cells	blood

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