Variant report

Variant	rs28409508
Chromosome Location	chr14:81904493-81904494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81900832..81903821-chr14:81904078..81906924,3	K562	blood:
2	chr14:81866745..81868446-chr14:81903093..81904882,2	K562	blood:
3	chr14:81903553..81905384-chr14:81907954..81910407,2	MCF-7	breast:
4	chr14:81684709..81688864-chr14:81899235..81906709,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction
ENSG00000140022	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11159500	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12100504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12100962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12100967	0.86[ASN][1000 genomes]
rs12101219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12586522	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12586556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12586611	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12586817	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12589111	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12589155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12589750	0.87[ASN][1000 genomes]
rs12590539	0.93[ASN][1000 genomes]
rs17111807	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17111815	0.81[ASN][1000 genomes]
rs17111817	0.87[ASN][1000 genomes]
rs17111825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111839	0.82[ASN][1000 genomes]
rs17111840	0.82[ASN][1000 genomes]
rs17111848	0.82[ASN][1000 genomes]
rs17847450	1.00[EUR][1000 genomes]
rs2371601	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3853422	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58510940	1.00[EUR][1000 genomes]
rs58975890	0.82[ASN][1000 genomes]
rs60733078	0.84[ASN][1000 genomes]
rs731389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs731390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73344113	0.84[ASN][1000 genomes]
rs73344115	0.84[ASN][1000 genomes]
rs73344119	0.84[ASN][1000 genomes]
rs73344128	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv510645	chr14:81874624-81907004	Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	esv1807931	chr14:81878972-81908605	Bivalent Enhancer Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
6	esv1842834	chr14:81878972-81908605	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
7	esv1844298	chr14:81878972-81908605	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81903600-81904800	Enhancers	Fetal Intestine Small	intestine
2	chr14:81904000-81904800	Enhancers	K562	blood

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