Variant report

Variant	rs28409912
Chromosome Location	chr14:26227597-26227598
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10132400	0.91[AFR][1000 genomes]
rs28684547	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427937	chr14:26038386-26405118	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832751	chr14:26089042-26299571	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038014	chr14:26191545-26439394	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26225000-26227600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr14:26225400-26227600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr14:26226000-26229000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:26226600-26227800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr14:26226800-26227600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr14:26227000-26227600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:26227000-26235600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:26227200-26229200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:26227200-26235400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:26227400-26228600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:26227400-26228800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links