Variant report

Variant	rs2841193
Chromosome Location	chr1:73311597-73311598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1525983	1.00[EUR][1000 genomes]
rs1526003	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2462726	1.00[EUR][1000 genomes]
rs2462728	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2494757	1.00[EUR][1000 genomes]
rs2494758	1.00[EUR][1000 genomes]
rs2692846	1.00[EUR][1000 genomes]
rs2692861	1.00[EUR][1000 genomes]
rs2692872	1.00[EUR][1000 genomes]
rs2841183	1.00[EUR][1000 genomes]
rs4606265	1.00[EUR][1000 genomes]
rs6679157	1.00[EUR][1000 genomes]
rs72935499	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74092234	1.00[EUR][1000 genomes]
rs940916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013549	chr1:73209040-73408373	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001105	chr1:73262558-73319499	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014200	chr1:73310043-73345847	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73304400-73312400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:73304400-73312800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:73310800-73314000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:73311000-73312800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:73311200-73313600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr1:73311200-73313800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:73311400-73311600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:73311400-73311600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:73311400-73311800	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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