Variant report

Variant	rs28413581
Chromosome Location	chr15:76016583-76016584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28513432	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
4	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
6	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
8	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76009400-76017600	Enhancers	Stomach Mucosa	stomach
2	chr15:76013000-76018600	Enhancers	Fetal Muscle Leg	muscle
3	chr15:76013200-76017800	Enhancers	Fetal Stomach	stomach
4	chr15:76013400-76017200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:76013600-76025000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:76013800-76029800	Weak transcription	HSMM	muscle
7	chr15:76014200-76018800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr15:76014800-76017600	Enhancers	Fetal Intestine Small	intestine
9	chr15:76015000-76017000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:76015000-76017000	Enhancers	Fetal Thymus	thymus
11	chr15:76015200-76016600	Enhancers	A549	lung
12	chr15:76015200-76016800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:76015200-76017000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:76015200-76017000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr15:76015200-76017200	Enhancers	Colon Smooth Muscle	Colon
16	chr15:76015200-76017200	Enhancers	Fetal Lung	lung
17	chr15:76015200-76017600	Enhancers	Fetal Intestine Large	intestine
18	chr15:76015400-76016600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr15:76015400-76018600	Enhancers	Placenta	Placenta
20	chr15:76015600-76016600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:76015600-76016600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:76015600-76016600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr15:76015600-76016600	Enhancers	Brain Germinal Matrix	brain
24	chr15:76015600-76016600	Enhancers	Esophagus	oesophagus
25	chr15:76015600-76016600	Enhancers	Left Ventricle	heart
26	chr15:76015600-76016600	Enhancers	Lung	lung
27	chr15:76015600-76016600	Enhancers	Small Intestine	intestine
28	chr15:76015600-76016600	Enhancers	K562	blood
29	chr15:76015600-76016800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:76015600-76016800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:76015600-76016800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:76015600-76016800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:76015600-76016800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:76015600-76016800	Enhancers	Right Atrium	heart
35	chr15:76015600-76016800	Enhancers	Right Ventricle	heart
36	chr15:76015600-76016800	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr15:76015600-76016800	Enhancers	NH-A	brain
38	chr15:76015600-76017000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:76015600-76017000	Enhancers	Placenta Amnion	Placenta Amnion
40	chr15:76015600-76017000	Enhancers	HMEC	breast
41	chr15:76015600-76017000	Enhancers	NHLF	lung
42	chr15:76015600-76017200	Enhancers	Fetal Kidney	kidney
43	chr15:76015600-76017200	Enhancers	Rectal Smooth Muscle	rectum
44	chr15:76015600-76018800	Enhancers	Fetal Heart	heart
45	chr15:76015800-76016600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:76015800-76016600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr15:76015800-76016600	Enhancers	Primary hematopoietic stem cells	blood
48	chr15:76015800-76016800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr15:76015800-76016800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:76015800-76016800	Enhancers	Brain Anterior Caudate	brain

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