Variant report

Variant	rs2841508
Chromosome Location	chr6:13578873-13578874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13578124..13581841-chr6:13613273..13616529,4	MCF-7	breast:
2	chr6:13578075..13581950-chr6:13589832..13593029,4	K562	blood:

Variant related genes	Relation type
ENSG00000225921	Chromatin interaction
ENSG00000261071	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11753306	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328676	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2804910	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804911	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804914	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804916	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804917	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804919	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804920	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2804922	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804924	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2804925	0.97[ASN][1000 genomes]
rs2804926	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2804927	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2841505	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2841506	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2841507	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2841509	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2841511	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712037	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2841508	SIRT5	cis	Thyroid	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13575600-13580000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:13575600-13580200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:13575600-13580200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:13575600-13580200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:13575600-13580200	Weak transcription	Ovary	ovary
6	chr6:13575600-13580200	Weak transcription	Spleen	Spleen
7	chr6:13575600-13580800	Weak transcription	Aorta	Aorta
8	chr6:13575600-13580800	Weak transcription	Left Ventricle	heart
9	chr6:13575600-13581400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:13575600-13581600	Weak transcription	Psoas Muscle	Psoas
11	chr6:13575600-13581600	Weak transcription	Right Ventricle	heart
12	chr6:13575600-13581600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:13575600-13581800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:13575600-13581800	Weak transcription	Brain Angular Gyrus	brain
15	chr6:13575600-13581800	Weak transcription	Lung	lung
16	chr6:13575600-13584000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:13575600-13584400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:13575600-13584400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:13575600-13584400	Weak transcription	Brain Anterior Caudate	brain
20	chr6:13575600-13584400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:13575600-13586800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:13575600-13586800	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:13575600-13586800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:13575600-13587000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:13575600-13587000	Weak transcription	Colonic Mucosa	Colon
26	chr6:13575600-13587000	Weak transcription	Esophagus	oesophagus
27	chr6:13575600-13587000	Weak transcription	NHLF	lung
28	chr6:13575600-13587200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:13575600-13587200	Weak transcription	Gastric	stomach
30	chr6:13575600-13587200	Weak transcription	Pancreas	Pancrea
31	chr6:13575600-13587600	Weak transcription	NHDF-Ad	bronchial
32	chr6:13575600-13587800	Weak transcription	Fetal Lung	lung
33	chr6:13575600-13588200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:13575600-13588400	Weak transcription	Fetal Brain Male	brain
35	chr6:13575600-13608200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:13575600-13613800	Weak transcription	Stomach Mucosa	stomach
37	chr6:13575600-13614400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:13575800-13579200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:13575800-13580200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:13575800-13580200	Weak transcription	Adipose Nuclei	Adipose
41	chr6:13575800-13580200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:13575800-13580200	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:13575800-13580200	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:13575800-13580400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:13575800-13580400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:13575800-13581600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:13575800-13581800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:13575800-13584200	Weak transcription	Fetal Stomach	stomach
49	chr6:13575800-13584400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:13575800-13584600	Weak transcription	Thymus	Thymus

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