Variant report

Variant	rs28419488
Chromosome Location	chr21:28952731-28952732
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11910375	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11910943	0.85[EUR][1000 genomes]
rs2054202	0.85[EUR][1000 genomes]
rs2125210	0.90[EUR][1000 genomes]
rs2831011	0.90[EUR][1000 genomes]
rs2831021	1.00[EUR][1000 genomes]
rs28697177	1.00[EUR][1000 genomes]
rs7280282	0.88[EUR][1000 genomes]
rs885490	0.89[EUR][1000 genomes]
rs994686	0.85[EUR][1000 genomes]
rs9975408	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9976827	0.90[EUR][1000 genomes]
rs9982999	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv459229	chr21:28543456-29482488	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv587342	chr21:28543456-29482488	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv834071	chr21:28806911-28988880	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv913669	chr21:28932087-28981553	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28945000-28953600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr21:28946600-28953600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr21:28946800-28953800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr21:28951800-28953800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr21:28952000-28953000	Enhancers	HMEC	breast
6	chr21:28952000-28955200	Enhancers	NHEK	skin
7	chr21:28952000-28957200	Enhancers	Osteobl	bone
8	chr21:28952400-28962200	Weak transcription	HSMM	muscle
9	chr21:28952600-28953800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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