Variant report

Variant	rs28419625
Chromosome Location	chr15:55229125-55229126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11071152	0.80[AFR][1000 genomes]
rs11071153	0.80[AFR][1000 genomes]
rs11071154	0.80[AFR][1000 genomes]
rs11071155	0.80[AFR][1000 genomes]
rs11071156	0.80[AFR][1000 genomes]
rs1406264	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1629366	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1715952	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1728895	0.87[EUR][1000 genomes]
rs1915194	0.81[AFR][1000 genomes]
rs1915195	0.81[AFR][1000 genomes]
rs1915196	0.81[AFR][1000 genomes]
rs1915197	0.81[AFR][1000 genomes]
rs28413657	0.81[AFR][1000 genomes]
rs28433816	0.81[AFR][1000 genomes]
rs28446985	0.87[EUR][1000 genomes]
rs28485351	0.81[AFR][1000 genomes]
rs28533686	0.82[AFR][1000 genomes]
rs28538783	0.80[EUR][1000 genomes]
rs28576283	0.81[AFR][1000 genomes]
rs28578291	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581482	0.81[AFR][1000 genomes]
rs28583904	0.81[AFR][1000 genomes]
rs28584748	0.81[AFR][1000 genomes]
rs28592965	0.81[AFR][1000 genomes]
rs28610247	0.83[EUR][1000 genomes]
rs28623280	0.87[EUR][1000 genomes]
rs28649002	0.81[AFR][1000 genomes]
rs28654296	0.81[AFR][1000 genomes]
rs28657557	0.87[EUR][1000 genomes]
rs28694787	0.81[AFR][1000 genomes]
rs28714273	0.87[EUR][1000 genomes]
rs28720044	0.87[EUR][1000 genomes]
rs28897497	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3858880	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56036017	0.82[AFR][1000 genomes]
rs6493729	0.81[AFR][1000 genomes]
rs6493730	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6493731	0.81[AFR][1000 genomes]
rs6493732	0.81[AFR][1000 genomes]
rs7165315	0.85[AFR][1000 genomes]
rs7171835	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176828	0.87[EUR][1000 genomes]
rs74015026	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7496202	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8034234	0.81[AFR][1000 genomes]
rs9920295	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035785	chr15:54951691-55266222	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv542390	chr15:54951691-55266222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1047424	chr15:55098585-55243518	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv833014	chr15:55099183-55249491	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv904239	chr15:55141265-55272996	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv569520	chr15:55170999-55327439	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv904240	chr15:55177426-55233979	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1541	chr15:55190471-55247202	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv111	chr15:55208707-55247202	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55225200-55252800	Weak transcription	Aorta	Aorta

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