Variant report

Variant	rs28419680
Chromosome Location	chr8:90479872-90479873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10094327	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10103261	0.83[EUR][1000 genomes]
rs10103935	0.83[EUR][1000 genomes]
rs10104048	0.83[EUR][1000 genomes]
rs10216900	0.90[EUR][1000 genomes]
rs1032225	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10956094	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956095	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956101	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1155439	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11778295	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11992806	0.83[EUR][1000 genomes]
rs11996000	0.83[EUR][1000 genomes]
rs13258962	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13282067	0.90[EUR][1000 genomes]
rs1487672	0.90[EUR][1000 genomes]
rs1487678	0.83[EUR][1000 genomes]
rs1996853	0.81[EUR][1000 genomes]
rs2338805	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28533837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28601654	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28771098	0.89[EUR][1000 genomes]
rs34059260	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35285023	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4571769	0.80[EUR][1000 genomes]
rs4576465	0.83[EUR][1000 genomes]
rs4960972	0.80[EUR][1000 genomes]
rs4960973	0.80[EUR][1000 genomes]
rs4961142	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56135833	0.80[EUR][1000 genomes]
rs6470114	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6470130	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6982792	0.85[EUR][1000 genomes]
rs6995460	0.80[EUR][1000 genomes]
rs7016878	0.87[EUR][1000 genomes]
rs7813670	0.83[EUR][1000 genomes]
rs7822577	0.81[EUR][1000 genomes]
rs7835139	0.95[EUR][1000 genomes]
rs7836857	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9297665	0.81[EUR][1000 genomes]
rs9642864	0.90[EUR][1000 genomes]
rs9643174	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2761173	chr8:90404592-90592009	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv984554	chr8:90410700-90501154	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027327	chr8:90426338-90585108	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1020787	chr8:90437076-90504137	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv972191	chr8:90474963-90483818	Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1028969	chr8:90475194-90650295	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv528988	chr8:90475375-90608246	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv611720	chr8:90476925-90608246	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90458400-90482400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:90479000-90481200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:90479400-90481200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:90479600-90482000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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