Variant report

Variant	rs2842044
Chromosome Location	chr1:69522403-69522404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1039740	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064838	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096838	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1396023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1507859	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2494933	1.00[EUR][1000 genomes]
rs2661470	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2842045	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2842046	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2842054	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783039	1.00[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69521200-69524800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:69521600-69522600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:69521600-69523800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:69521600-69526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:69521600-69527200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:69521800-69523800	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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