Variant report

Variant	rs28420898
Chromosome Location	chr8:99249321-99249322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99248772..99250324-chr8:99305067..99306617,2	MCF-7	breast:
2	chr8:99241307..99248169-chr8:99249290..99255267,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10096435	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12550682	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271095	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597686	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4735541	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv6326	chr8:99221674-99263687	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99203800-99252600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:99205200-99259600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:99218400-99259000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr8:99226200-99267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:99229400-99267000	Weak transcription	Left Ventricle	heart
6	chr8:99235400-99268400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:99239400-99268600	Weak transcription	Aorta	Aorta
8	chr8:99239800-99252600	Weak transcription	Esophagus	oesophagus
9	chr8:99240400-99259400	Weak transcription	Fetal Intestine Large	intestine
10	chr8:99240400-99259400	Weak transcription	Pancreas	Pancrea
11	chr8:99240400-99264400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:99240400-99266200	Weak transcription	Fetal Stomach	stomach
13	chr8:99240600-99250800	Weak transcription	Adipose Nuclei	Adipose
14	chr8:99240600-99267000	Weak transcription	Gastric	stomach
15	chr8:99240600-99294200	Weak transcription	Ovary	ovary
16	chr8:99240800-99252400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:99240800-99259200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:99241000-99259200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:99241000-99259200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:99241000-99269400	Weak transcription	Fetal Intestine Small	intestine
21	chr8:99242800-99255200	Weak transcription	HSMM	muscle
22	chr8:99243800-99252400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:99244000-99259400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:99245800-99250000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr8:99246200-99249400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:99248000-99249400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:99248200-99249400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:99248200-99249400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr8:99248200-99250400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:99248400-99249400	Enhancers	NHDF-Ad	bronchial
31	chr8:99248600-99259600	Weak transcription	Psoas Muscle	Psoas
32	chr8:99249000-99249400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr8:99249000-99251400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:99249000-99251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:99249000-99251600	Weak transcription	HMEC	breast
36	chr8:99249000-99251800	Weak transcription	Osteobl	bone
37	chr8:99249000-99252600	Weak transcription	Right Ventricle	heart
38	chr8:99249000-99256600	Weak transcription	HSMMtube	muscle
39	chr8:99249000-99267800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:99249200-99259400	Weak transcription	Monocytes-CD14+_RO01746	blood

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