Variant report

Variant	rs28422813
Chromosome Location	chr6:141773166-141773167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11505194	1.00[AFR][1000 genomes]
rs9484505	1.00[AFR][1000 genomes]
rs9484506	1.00[AFR][1000 genomes]
rs9484508	1.00[AFR][1000 genomes]
rs9484512	1.00[AFR][1000 genomes]
rs9496002	1.00[AFR][1000 genomes]
rs9496004	1.00[AFR][1000 genomes]
rs9496007	0.96[AFR][1000 genomes]
rs9496014	1.00[AFR][1000 genomes]
rs9496016	1.00[AFR][1000 genomes]
rs9496022	0.89[AFR][1000 genomes]
rs9496026	0.92[AFR][1000 genomes]
rs9496028	0.92[AFR][1000 genomes]
rs9496032	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv886727	chr6:141610933-141793547	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141771000-141773600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:141771200-141773400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:141771200-141773600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:141771200-141773800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:141771200-141774000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:141771400-141773400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:141771600-141774200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:141771800-141773600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:141771800-141774000	Enhancers	HUVEC	blood vessel
10	chr6:141772000-141773800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:141772000-141774000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:141772000-141774000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:141772000-141774000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:141772000-141774000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:141772000-141774000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:141772000-141774000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:141772000-141774000	Enhancers	HMEC	breast
18	chr6:141772000-141774000	Enhancers	HSMM	muscle
19	chr6:141772000-141774000	Enhancers	NH-A	brain
20	chr6:141772000-141774000	Enhancers	NHEK	skin
21	chr6:141772000-141774000	Enhancers	Osteobl	bone
22	chr6:141772200-141773600	Enhancers	A549	lung
23	chr6:141772200-141774000	Enhancers	Hela-S3	cervix
24	chr6:141772200-141774000	Enhancers	HSMMtube	muscle
25	chr6:141772200-141774000	Enhancers	NHLF	lung
26	chr6:141772400-141773200	Enhancers	H9 Cell Line	embryonic stem cell
27	chr6:141772400-141773200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr6:141772400-141773200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:141772400-141773200	Enhancers	Right Atrium	heart
30	chr6:141772400-141773400	Enhancers	H1 Cell Line	embryonic stem cell
31	chr6:141772400-141773600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:141772400-141773800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:141772400-141774200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:141772800-141773200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:141772800-141773200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr6:141772800-141773200	Flanking Active TSS	NHDF-Ad	bronchial

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