Variant report

Variant	rs2842318
Chromosome Location	chr14:68951127-68951128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68925693..68928632-chr14:68950359..68952999,2	MCF-7	breast:
2	chr14:68949014..68951407-chr14:68955000..68958797,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10133813	0.84[ASN][1000 genomes]
rs10139107	0.86[ASN][1000 genomes]
rs10146058	0.87[ASN][1000 genomes]
rs10148720	0.86[ASN][1000 genomes]
rs10782456	0.87[ASN][1000 genomes]
rs12587397	0.86[ASN][1000 genomes]
rs12886429	0.88[ASN][1000 genomes]
rs12888301	0.80[ASN][1000 genomes]
rs4902595	0.86[ASN][1000 genomes]
rs4902596	0.85[ASN][1000 genomes]
rs7160842	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68939000-68951600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:68943400-68951600	Enhancers	Placenta	Placenta
3	chr14:68943800-68957400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:68944000-68959200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:68944200-68951800	Weak transcription	Liver	Liver
6	chr14:68944200-68953600	Weak transcription	Right Atrium	heart
7	chr14:68944200-68955000	Weak transcription	Esophagus	oesophagus
8	chr14:68944200-68957400	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:68944400-68968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:68944600-68957400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:68944800-68953800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:68945000-68951200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr14:68945400-68951800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:68945400-68959600	Weak transcription	Primary B cells from cord blood	blood
15	chr14:68947200-68952000	Weak transcription	Fetal Intestine Large	intestine
16	chr14:68947400-68952400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr14:68947400-68952800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:68947400-68953400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr14:68947600-68952400	Enhancers	Primary T cells from cord blood	blood
20	chr14:68947800-68952600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr14:68948200-68952400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr14:68948800-68952200	Enhancers	Stomach Mucosa	stomach
23	chr14:68949000-68951800	Enhancers	Colon Smooth Muscle	Colon
24	chr14:68949000-68952000	Enhancers	Thymus	Thymus
25	chr14:68949200-68952400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr14:68949400-68952000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:68949400-68952200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:68949400-68952400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:68949600-68952000	Enhancers	Dnd41	blood
30	chr14:68949600-68952200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:68949600-68952200	Enhancers	Fetal Thymus	thymus
32	chr14:68949600-68955400	Enhancers	Pancreas	Pancrea
33	chr14:68949800-68951200	Enhancers	NHEK	skin
34	chr14:68949800-68952000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:68949800-68955600	Enhancers	Hela-S3	cervix
36	chr14:68950000-68954800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:68950200-68951200	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr14:68950200-68951600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr14:68950200-68952400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr14:68950200-68952600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr14:68950200-68954600	Enhancers	HepG2	liver
42	chr14:68950400-68951800	Weak transcription	Fetal Heart	heart
43	chr14:68950600-68951600	Weak transcription	Small Intestine	intestine
44	chr14:68950600-68951800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr14:68950600-68952800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:68950600-68953000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:68950600-68968200	Weak transcription	Gastric	stomach
48	chr14:68950800-68951800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:68950800-68952200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr14:68950800-68952600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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