Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16873132	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1843482	0.85[ASN][1000 genomes]
rs1994304	0.93[ASN][1000 genomes]
rs28645461	1.00[EUR][1000 genomes]
rs28650456	1.00[EUR][1000 genomes]
rs3912484	1.00[ASN][1000 genomes]
rs4697023	1.00[ASN][1000 genomes]
rs4697024	1.00[ASN][1000 genomes]
rs4697025	0.86[ASN][1000 genomes]
rs4697334	0.85[ASN][1000 genomes]
rs4697335	0.85[ASN][1000 genomes]
rs4697336	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697337	1.00[ASN][1000 genomes]
rs4697341	1.00[ASN][1000 genomes]
rs4697342	0.96[ASN][1000 genomes]
rs4697343	0.93[ASN][1000 genomes]
rs4697345	0.93[ASN][1000 genomes]
rs4697346	0.93[ASN][1000 genomes]
rs4697347	0.86[ASN][1000 genomes]
rs57088167	0.85[ASN][1000 genomes]
rs57398192	0.85[ASN][1000 genomes]
rs57416765	1.00[ASN][1000 genomes]
rs57472271	0.85[ASN][1000 genomes]
rs58227029	1.00[ASN][1000 genomes]
rs58424918	0.86[ASN][1000 genomes]
rs59809824	1.00[ASN][1000 genomes]
rs59935140	1.00[ASN][1000 genomes]
rs61233864	0.85[ASN][1000 genomes]
rs6811321	1.00[ASN][1000 genomes]
rs6820730	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6832711	1.00[EUR][1000 genomes]
rs7657589	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005733	chr4:22747306-22833517	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22753200-22772000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:22757600-22770400	Weak transcription	Fetal Intestine Large	intestine
3	chr4:22758600-22768000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:22763200-22767600	Weak transcription	Liver	Liver
5	chr4:22764400-22767000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:22765200-22766400	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:22765400-22766400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:22765400-22766400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:22765600-22766200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:22765600-22766600	Enhancers	Primary hematopoietic stem cells	blood
11	chr4:22765800-22767200	Weak transcription	Primary B cells from cord blood	blood

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