Variant report

Variant	rs28427518
Chromosome Location	chr4:166796325-166796326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9308118	0.83[AMR][1000 genomes]
rs9985986	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490569	chr4:166680129-166981346	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3490570	chr4:166680129-166981346	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880566	chr4:166739128-166848001	Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1016754	chr4:166784803-166826664	Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166793400-166796400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr4:166793400-166796400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr4:166793400-166796400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr4:166793600-166796400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:166793600-166796400	Active TSS	Brain Anterior Caudate	brain
6	chr4:166793600-166796400	Active TSS	Colon Smooth Muscle	Colon
7	chr4:166793600-166796400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
8	chr4:166793800-166796400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
9	chr4:166793800-166796400	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
10	chr4:166793800-166796400	Bivalent/Poised TSS	A549	lung
11	chr4:166793800-166796600	Active TSS	Brain Angular Gyrus	brain
12	chr4:166794000-166796400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
13	chr4:166794200-166796400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr4:166794400-166796600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr4:166794800-166796400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:166794800-166796400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
17	chr4:166794800-166796400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
18	chr4:166794800-166796400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
19	chr4:166794800-166796400	Flanking Active TSS	Placenta	Placenta
20	chr4:166794800-166796600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
21	chr4:166794800-166796600	Active TSS	Hela-S3	cervix
22	chr4:166795200-166796400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:166795200-166796400	Flanking Active TSS	HUVEC	blood vessel
24	chr4:166795200-166797000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:166795400-166796400	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:166795400-166796400	Bivalent/Poised TSS	Colonic Mucosa	Colon
27	chr4:166795400-166796600	Bivalent Enhancer	Liver	Liver
28	chr4:166795400-166796600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
29	chr4:166795600-166796400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:166795600-166796400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:166795600-166796400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr4:166795600-166796400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
33	chr4:166795600-166796400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
34	chr4:166795600-166796400	Bivalent Enhancer	Fetal Thymus	thymus
35	chr4:166795600-166796600	Flanking Active TSS	HMEC	breast
36	chr4:166795800-166796400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:166795800-166796400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:166795800-166796400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
39	chr4:166796000-166796400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:166796000-166796400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr4:166796000-166796400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
42	chr4:166796000-166796400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
43	chr4:166796000-166796400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
44	chr4:166796000-166796400	Active TSS	Duodenum Mucosa	Duodenum
45	chr4:166796000-166796400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
46	chr4:166796000-166796400	Flanking Active TSS	Left Ventricle	heart
47	chr4:166796000-166796400	Flanking Active TSS	Right Atrium	heart
48	chr4:166796000-166796400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
49	chr4:166796000-166796800	Flanking Active TSS	NHEK	skin
50	chr4:166796200-166796400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell

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