Variant report

Variant	rs2842811
Chromosome Location	chr6:63066471-63066472
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10945226	0.80[EUR][1000 genomes]
rs11758619	0.80[EUR][1000 genomes]
rs12528424	0.80[EUR][1000 genomes]
rs12662273	0.80[EUR][1000 genomes]
rs12663464	0.80[EUR][1000 genomes]
rs16884023	0.80[EUR][1000 genomes]
rs16884169	0.80[EUR][1000 genomes]
rs2345331	0.80[EUR][1000 genomes]
rs2495266	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2495267	0.80[EUR][1000 genomes]
rs2639412	0.80[EUR][1000 genomes]
rs2639413	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2639414	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2639415	0.80[EUR][1000 genomes]
rs2814648	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814649	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814650	0.80[EUR][1000 genomes]
rs2814651	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814652	0.80[EUR][1000 genomes]
rs2814654	0.80[EUR][1000 genomes]
rs2814655	0.82[AMR][1000 genomes]
rs2814680	0.80[EUR][1000 genomes]
rs2814681	0.80[EUR][1000 genomes]
rs2842802	0.80[EUR][1000 genomes]
rs2842809	0.80[EUR][1000 genomes]
rs2842810	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2842812	0.80[EUR][1000 genomes]
rs62416568	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62416569	0.80[EUR][1000 genomes]
rs876854	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv916760	chr6:62944661-63290986	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv603350	chr6:63066240-63152724	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63064800-63067600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:63066200-63066600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:63066200-63066600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast

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