Variant report

Variant	rs284296
Chromosome Location	chr1:10712089-10712090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr1:10711793-10712195	H1-hESC	embryonic stem cell:	n/a	n/a
2	MXI1	chr1:10711850-10712261	H1-hESC	embryonic stem cell:	n/a	chr1:10711985-10711994 chr1:10711983-10711992 chr1:10711985-10711994
3	TEAD4	chr1:10711925-10712391	H1-hESC	embryonic stem cell:	n/a	chr1:10712150-10712159
4	SIN3A	chr1:10711655-10712223	H1-hESC	embryonic stem cell:	n/a	chr1:10711712-10711723 chr1:10711833-10711841 chr1:10711983-10711992 chr1:10711985-10711994
5	MYC	chr1:10711984-10712094	MCF-7	breast:	n/a	chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711984-10711994 chr1:10711984-10711993
6	USF2	chr1:10711955-10712130	H1-hESC	embryonic stem cell:	n/a	n/a
7	GABPA	chr1:10711919-10712306	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr1:10711896-10712148	K562	blood:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
9	MAX	chr1:10711491-10712270	H1-hESC	embryonic stem cell:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
10	MYC	chr1:10711900-10712174	K562	blood:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
11	MAX	chr1:10711436-10712302	H1-hESC	embryonic stem cell:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
12	MAX	chr1:10711522-10712159	H1-hESC	embryonic stem cell:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
13	USF1	chr1:10711824-10712095	K562	blood:	n/a	n/a
14	MAX	chr1:10711471-10712220	K562	blood:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
15	MAX	chr1:10711474-10712301	ECC-1	luminal epithelium:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
16	USF1	chr1:10711759-10712239	ECC-1	luminal epithelium:	n/a	n/a
17	IRF1	chr1:10711910-10712110	K562	blood:	n/a	chr1:10712034-10712048
18	RCOR1	chr1:10712021-10712171	K562	blood:	n/a	n/a
19	MAX	chr1:10711436-10712265	ECC-1	luminal epithelium:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
20	MAX	chr1:10711854-10712217	MCF-7	breast:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
21	MAX	chr1:10711876-10712193	K562	blood:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
22	USF1	chr1:10711758-10712170	ECC-1	luminal epithelium:	n/a	n/a
23	MYC	chr1:10711945-10712120	MCF-7	breast:	n/a	chr1:10711983-10711994 chr1:10711984-10711993 chr1:10711984-10711993 chr1:10711983-10711994 chr1:10711983-10711993 chr1:10711984-10711994 chr1:10711984-10711993 chr1:10711982-10711995
24	E2F6	chr1:10711464-10712175	H1-hESC	embryonic stem cell:	n/a	chr1:10711619-10711628
25	USF1	chr1:10711698-10712266	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:10712004..10714801-chr1:10852157..10855382,3	MCF-7	breast:
2	chr1:10711257..10713486-chr1:10721428..10724018,2	MCF-7	breast:
3	chr1:10703132..10705545-chr1:10711056..10713011,2	K562	blood:

Variant related genes	Relation type
CASZ1	TF binding region
ENSG00000130940	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1796630	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284243	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284245	0.93[AMR][1000 genomes]
rs284252	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs284295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284298	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284299	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs284300	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284320	0.95[EUR][1000 genomes]
rs284322	0.81[EUR][1000 genomes]
rs778228	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1010424	chr1:10667559-10747891	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv464394	chr1:10673094-10767902	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv545396	chr1:10673094-10767902	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1828181	chr1:10673130-10829937	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv464505	chr1:10673194-10767785	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv545397	chr1:10673194-10767785	Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv464616	chr1:10673194-10767902	Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv545398	chr1:10673194-10767902	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv464727	chr1:10673194-10777260	Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv545399	chr1:10673194-10777260	Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1003427	chr1:10675978-10727284	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1010420	chr1:10675978-10747891	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1004063	chr1:10675978-10780682	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv1014003	chr1:10675978-10788624	Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv1014818	chr1:10675978-10846823	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	esv29966	chr1:10676800-10874152	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv828030	chr1:10677562-10795161	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	nsv871824	chr1:10684098-10743363	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv871950	chr1:10684098-10750432	Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv870683	chr1:10684098-10757199	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv871361	chr1:10684098-10767785	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv871290	chr1:10684098-10777260	Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv871191	chr1:10684098-10796866	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
25	nsv464838	chr1:10684098-10842021	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
26	nsv545400	chr1:10684098-10842021	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
27	nsv534857	chr1:10688713-10714182	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv1001806	chr1:10688713-10727284	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv998197	chr1:10688713-10742654	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
30	nsv534858	chr1:10688713-10742654	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
31	nsv997631	chr1:10688713-10747891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
32	nsv1015054	chr1:10688713-10780682	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
33	nsv1006689	chr1:10688713-10822684	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
34	nsv871478	chr1:10689942-10766466	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
35	nsv871156	chr1:10690948-10750432	Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
36	nsv464949	chr1:10690948-10757199	Bivalent Enhancer Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
37	nsv545401	chr1:10690948-10757199	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
38	nsv465061	chr1:10690948-10796866	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
39	nsv545402	chr1:10690948-10796866	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
40	nsv871070	chr1:10690948-10796866	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
41	nsv871737	chr1:10693294-10757199	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
42	nsv870483	chr1:10694125-10750432	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
43	nsv870460	chr1:10694125-10757199	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
44	nsv870923	chr1:10694125-10801585	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
45	nsv525693	chr1:10694125-10840905	Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
46	nsv870849	chr1:10694125-10894724	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
47	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
48	nsv828364	chr1:10697810-10764164	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
49	nsv1012022	chr1:10698017-10727284	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
50	nsv534859	chr1:10698017-10727284	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10651600-10715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:10697400-10722000	Strong transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:10698200-10713600	Weak transcription	Small Intestine	intestine
4	chr1:10698800-10726400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:10698800-10752000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:10699000-10712400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:10699000-10713600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:10699000-10714000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:10699000-10723000	Weak transcription	Psoas Muscle	Psoas
10	chr1:10700400-10722800	Weak transcription	Ovary	ovary
11	chr1:10702600-10721600	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr1:10704400-10720400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:10705200-10714000	Weak transcription	HSMMtube	muscle
14	chr1:10705400-10712600	Weak transcription	Liver	Liver
15	chr1:10705400-10725800	Weak transcription	HMEC	breast
16	chr1:10706200-10715400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr1:10706400-10712600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr1:10706400-10713000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr1:10706400-10713000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:10706400-10724000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr1:10706600-10719200	Weak transcription	Primary B cells from cord blood	blood
22	chr1:10706600-10723200	Weak transcription	Right Atrium	heart
23	chr1:10707000-10712800	Strong transcription	Right Ventricle	heart
24	chr1:10707400-10712400	Bivalent Enhancer	Fetal Stomach	stomach
25	chr1:10707800-10712800	Weak transcription	Dnd41	blood
26	chr1:10707800-10731200	Weak transcription	NHEK	skin
27	chr1:10708000-10712400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr1:10708000-10719200	Weak transcription	Stomach Mucosa	stomach
29	chr1:10708200-10713000	Weak transcription	Aorta	Aorta
30	chr1:10708200-10713200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:10708400-10718400	Weak transcription	Primary T cells from cord blood	blood
32	chr1:10708600-10712600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:10708800-10712400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:10709400-10712200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:10709400-10713000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:10709600-10712400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr1:10709800-10712200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:10709800-10712200	Weak transcription	Colonic Mucosa	Colon
39	chr1:10709800-10713000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr1:10710000-10712400	Enhancers	Fetal Lung	lung
41	chr1:10710200-10723400	Weak transcription	Brain Anterior Caudate	brain
42	chr1:10710600-10712200	Enhancers	Placenta	Placenta
43	chr1:10710600-10721600	Strong transcription	Esophagus	oesophagus
44	chr1:10710800-10712400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
45	chr1:10711000-10712400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
46	chr1:10711200-10712200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:10711400-10712200	Enhancers	Brain Germinal Matrix	brain
48	chr1:10711400-10712200	Enhancers	Colon Smooth Muscle	Colon
49	chr1:10711400-10722000	Strong transcription	Spleen	Spleen
50	chr1:10711600-10712200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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