Variant report

Variant	rs28433554
Chromosome Location	chr14:82780535-82780536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10139679	1.00[AFR][1000 genomes]
rs28607925	1.00[AFR][1000 genomes]
rs28612918	1.00[AFR][1000 genomes]
rs28624382	1.00[AFR][1000 genomes]
rs28633535	1.00[AFR][1000 genomes]
rs28665528	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902123	chr14:82778603-82876504	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82779400-82781400	Enhancers	Fetal Lung	lung
2	chr14:82779800-82780600	Enhancers	Ovary	ovary
3	chr14:82779800-82780800	Enhancers	Brain Hippocampus Middle	brain
4	chr14:82780000-82781000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:82780200-82780600	Enhancers	Brain Substantia Nigra	brain
6	chr14:82780200-82780600	Weak transcription	Fetal Stomach	stomach
7	chr14:82780200-82780800	Enhancers	Brain Germinal Matrix	brain
8	chr14:82780200-82781000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:82780400-82780800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:82780400-82781000	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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