Variant report

Variant	rs28433603
Chromosome Location	chr7:97003240-97003241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10233208	1.00[AMR][1000 genomes]
rs12112007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57093308	1.00[AMR][1000 genomes]
rs57300799	1.00[AMR][1000 genomes]
rs57432235	1.00[AMR][1000 genomes]
rs6966731	1.00[AMR][1000 genomes]
rs73708733	0.86[AFR][1000 genomes]
rs73708752	1.00[AMR][1000 genomes]
rs73708753	1.00[AMR][1000 genomes]
rs73708762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028319	chr7:96940309-97012717	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3359061	chr7:96997047-97402692	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96998400-97003600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:96999000-97004000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:97003000-97003400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:97003000-97003400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:97003000-97003400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:97003000-97003600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:97003000-97003800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:97003000-97003800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:97003000-97003800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:97003000-97003800	Enhancers	Brain Anterior Caudate	brain
11	chr7:97003200-97003800	Enhancers	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links