Variant report

Variant	rs28434215
Chromosome Location	chr9:27112343-27112344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10967694	0.82[EUR][1000 genomes]
rs10967695	0.82[EUR][1000 genomes]
rs10967710	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10967711	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10967717	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967719	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12235354	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55759630	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57314689	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60281060	0.82[EUR][1000 genomes]
rs615375	0.81[ASN][1000 genomes]
rs627745	0.82[ASN][1000 genomes]
rs682067	0.81[ASN][1000 genomes]
rs682102	0.81[ASN][1000 genomes]
rs72713716	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27109000-27112600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
2	chr9:27109600-27112400	Active TSS	Adipose Nuclei	Adipose
3	chr9:27109600-27117600	Weak transcription	HSMMtube	muscle
4	chr9:27109600-27117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:27109800-27117600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:27110400-27122000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:27110400-27123200	Weak transcription	Fetal Lung	lung
8	chr9:27110600-27117600	Weak transcription	Ovary	ovary
9	chr9:27111200-27122000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:27111400-27117400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:27111400-27117600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:27111400-27124200	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:27111800-27112400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:27111800-27112400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:27111800-27112400	Enhancers	Osteobl	bone
16	chr9:27112000-27112800	Enhancers	HUVEC	blood vessel
17	chr9:27112200-27112800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:27112200-27115400	Weak transcription	Left Ventricle	heart
19	chr9:27112200-27117800	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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