Variant report

Variant	rs28437776
Chromosome Location	chr16:74361827-74361828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11645300	0.87[ASN][1000 genomes]
rs11859725	0.88[AMR][1000 genomes]
rs11866438	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13331008	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17336700	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2526078	0.84[ASN][1000 genomes]
rs2550468	0.84[ASN][1000 genomes]
rs2716592	0.84[ASN][1000 genomes]
rs28549800	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3971805	0.80[AMR][1000 genomes]
rs3971806	0.86[AMR][1000 genomes]
rs4636933	0.84[ASN][1000 genomes]
rs4887761	0.84[AMR][1000 genomes]
rs4888213	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4889482	0.84[ASN][1000 genomes]
rs4889483	0.84[ASN][1000 genomes]
rs4889485	0.91[ASN][1000 genomes]
rs4889486	0.84[ASN][1000 genomes]
rs6565049	0.84[ASN][1000 genomes]
rs7191375	0.91[ASN][1000 genomes]
rs7193734	0.91[ASN][1000 genomes]
rs7201205	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7201670	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73602799	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73604723	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs755859	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs918736	0.91[ASN][1000 genomes]
rs9921070	0.84[ASN][1000 genomes]
rs9932366	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9935986	0.91[ASN][1000 genomes]
rs9936663	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906901	chr16:73752982-74455293	Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3505286	chr16:73985029-74382420	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv3505287	chr16:73985029-74382420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv948443	chr16:73994997-74627711	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1066212	chr16:74068470-74527133	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv542954	chr16:74068470-74527133	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1065964	chr16:74088091-74575604	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv917046	chr16:74202828-74406136	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv833276	chr16:74216065-74438868	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv916687	chr16:74241238-74896721	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
11	esv2758431	chr16:74334780-74587185	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	esv2758656	chr16:74334780-74587185	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
13	nsv833277	chr16:74334787-74498133	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	esv2762054	chr16:74337036-74507056	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
15	esv10189	chr16:74337046-74464266	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	n/a
16	nsv827736	chr16:74337046-74464266	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	n/a
17	esv1820552	chr16:74348932-74462776	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	n/a
18	esv2760420	chr16:74350769-74456601	Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	n/a
19	esv1817585	chr16:74355081-74486997	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
20	esv1796135	chr16:74355113-74407367	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
21	esv1816929	chr16:74359736-74438745	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
22	nsv974833	chr16:74359860-74407645	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
23	esv1824164	chr16:74360067-74407282	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
24	esv1818283	chr16:74360067-74464693	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
25	nsv819754	chr16:74360377-74465133	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
26	nsv9457	chr16:74360656-74465146	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:74331800-74366400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:74332800-74401200	Weak transcription	Stomach Mucosa	stomach
3	chr16:74339600-74394000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr16:74340600-74387000	Weak transcription	Hela-S3	cervix
5	chr16:74340800-74400200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr16:74341400-74366600	Weak transcription	A549	lung
7	chr16:74341400-74371600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:74341400-74376200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr16:74341400-74400800	Weak transcription	NH-A	brain
10	chr16:74341600-74364200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr16:74341600-74364200	Weak transcription	Esophagus	oesophagus
12	chr16:74341600-74366400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr16:74341600-74371200	Weak transcription	HUVEC	blood vessel
14	chr16:74355200-74400800	Weak transcription	Fetal Brain Male	brain
15	chr16:74355600-74382200	Weak transcription	GM12878-XiMat	blood
16	chr16:74356600-74371400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr16:74357000-74362800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr16:74357400-74362600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr16:74357600-74367600	Strong transcription	Fetal Stomach	stomach
20	chr16:74357800-74367600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr16:74358200-74362400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr16:74358200-74362800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr16:74358200-74367200	Strong transcription	Fetal Intestine Small	intestine
24	chr16:74358600-74362000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr16:74358600-74362000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr16:74358600-74362200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr16:74358600-74362800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr16:74358800-74362000	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr16:74358800-74362200	Strong transcription	Fetal Brain Female	brain
30	chr16:74358800-74362400	Strong transcription	Fetal Intestine Large	intestine
31	chr16:74359000-74362000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr16:74359000-74362000	Strong transcription	Left Ventricle	heart
33	chr16:74359000-74362200	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr16:74359000-74362200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr16:74359000-74362400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr16:74359000-74362800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr16:74359000-74362800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr16:74359000-74362800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr16:74359000-74362800	Strong transcription	Fetal Muscle Leg	muscle
40	chr16:74359000-74362800	Strong transcription	Placenta	Placenta
41	chr16:74359000-74362800	Strong transcription	Spleen	Spleen
42	chr16:74359200-74362200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr16:74359200-74362200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr16:74359200-74362200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr16:74359200-74362200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr16:74359200-74362200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr16:74359200-74362200	Strong transcription	Liver	Liver
48	chr16:74359200-74362200	Strong transcription	Brain Anterior Caudate	brain
49	chr16:74359200-74362200	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr16:74359200-74362200	Strong transcription	NHDF-Ad	bronchial

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