Variant report

Variant	rs28437826
Chromosome Location	chr6:150383897-150383898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150380000..150382934-chr6:150383185..150385012,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11155703	0.87[EUR][1000 genomes]
rs12660117	0.82[EUR][1000 genomes]
rs12661709	0.81[EUR][1000 genomes]
rs12662067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662452	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12662494	0.87[EUR][1000 genomes]
rs17510877	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17510968	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28437445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4317422	0.87[EUR][1000 genomes]
rs4370377	0.87[EUR][1000 genomes]
rs4404781	0.87[EUR][1000 genomes]
rs4555928	0.87[EUR][1000 genomes]
rs4555929	0.87[EUR][1000 genomes]
rs4870236	0.89[ASN][1000 genomes]
rs4870237	0.89[ASN][1000 genomes]
rs4870238	0.89[ASN][1000 genomes]
rs4870239	0.89[ASN][1000 genomes]
rs56792817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58275143	0.81[EUR][1000 genomes]
rs58308254	0.81[EUR][1000 genomes]
rs72501729	0.87[EUR][1000 genomes]
rs7760453	0.87[EUR][1000 genomes]
rs7760592	0.87[EUR][1000 genomes]
rs7764605	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv7375	chr6:150324114-150388625	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3344440	chr6:150324131-150388650	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1026236	chr6:150360882-150408946	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv981195	chr6:150381921-150385392	Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150376000-150388800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150377800-150389400	Weak transcription	HSMMtube	muscle
3	chr6:150378600-150389400	Weak transcription	Right Atrium	heart
4	chr6:150378800-150384600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:150379400-150384600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:150379600-150389200	Weak transcription	Hela-S3	cervix
7	chr6:150379800-150384600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:150379800-150384600	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:150380000-150389600	Weak transcription	Aorta	Aorta
10	chr6:150380200-150384800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:150380200-150389400	Weak transcription	HSMM	muscle
12	chr6:150380400-150384800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:150380600-150389200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:150380800-150384600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:150380800-150387800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:150380800-150389200	Weak transcription	HMEC	breast
17	chr6:150380800-150389400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:150381000-150389200	Weak transcription	Lung	lung
19	chr6:150381400-150387200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:150381400-150389200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:150381600-150389200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:150381600-150389200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:150381600-150389200	Weak transcription	Right Ventricle	heart
24	chr6:150381600-150389400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:150381600-150389400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:150381800-150386800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:150381800-150389200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:150381800-150389200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:150381800-150389400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:150382000-150387000	Weak transcription	Spleen	Spleen
31	chr6:150382000-150389200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:150382000-150389200	Weak transcription	Esophagus	oesophagus
33	chr6:150382200-150389200	Weak transcription	Pancreas	Pancrea
34	chr6:150382400-150386200	Weak transcription	NHEK	skin
35	chr6:150382600-150389400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:150382800-150385200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:150382800-150389400	Weak transcription	NH-A	brain
38	chr6:150383000-150384600	Weak transcription	Fetal Stomach	stomach
39	chr6:150383000-150384600	Weak transcription	Gastric	stomach
40	chr6:150383000-150389200	Weak transcription	NHLF	lung
41	chr6:150383200-150389400	Weak transcription	Fetal Brain Female	brain
42	chr6:150383400-150386800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:150383400-150387000	Strong transcription	Osteobl	bone
44	chr6:150383600-150385200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:150383800-150385000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:150383800-150385600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:150383800-150389200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:150383800-150389400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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