The 2.0 version of rSNPBase

Variant report

Variant rs28437878
Chromosome Location chr15:78807872-78807873
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:78800400-78812200 Weak transcription Lung lung
2 chr15:78800600-78813600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr15:78800600-78822200 Weak transcription Pancreas Pancrea
4 chr15:78800600-78823600 Weak transcription Gastric stomach
5 chr15:78800800-78810200 Weak transcription Aorta Aorta
6 chr15:78800800-78812000 Weak transcription Stomach Smooth Muscle stomach
7 chr15:78800800-78813800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr15:78800800-78816400 Weak transcription Ovary ovary
9 chr15:78800800-78820800 Weak transcription Psoas Muscle Psoas
10 chr15:78800800-78823400 Weak transcription Colon Smooth Muscle Colon
11 chr15:78800800-78825600 Weak transcription Brain Angular Gyrus brain
12 chr15:78800800-78830800 Weak transcription Right Ventricle heart
13 chr15:78800800-78832000 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr15:78800800-78832200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr15:78800800-78832200 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr15:78800800-78832400 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr15:78801000-78809600 Weak transcription Liver Liver
18 chr15:78801000-78810000 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr15:78801000-78810400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr15:78801000-78812800 Weak transcription Brain Anterior Caudate brain
21 chr15:78801000-78813400 Weak transcription Brain Hippocampus Middle brain
22 chr15:78801000-78813600 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr15:78801000-78817800 Weak transcription Rectal Smooth Muscle rectum
24 chr15:78801000-78818200 Weak transcription Colonic Mucosa Colon
25 chr15:78801000-78825600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr15:78801000-78829600 Weak transcription Fetal Muscle Leg muscle
27 chr15:78801000-78832200 Weak transcription Adipose Nuclei Adipose
28 chr15:78801000-78832200 Weak transcription Fetal Kidney kidney
29 chr15:78801000-78832200 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr15:78801000-78832200 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr15:78801000-78832200 Weak transcription A549 lung
32 chr15:78801400-78810200 Weak transcription Fetal Intestine Small intestine
33 chr15:78802400-78815800 Weak transcription HepG2 liver
34 chr15:78802600-78813600 Weak transcription Primary T helper cells PMA-I stimulated --
35 chr15:78802600-78813800 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr15:78802800-78813200 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr15:78803000-78832200 Weak transcription Primary T cells from cord blood blood
38 chr15:78806800-78809600 Strong transcription Duodenum Mucosa Duodenum
39 chr15:78806800-78812600 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr15:78807000-78811400 Weak transcription Left Ventricle heart
41 chr15:78807600-78811200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr15:78807600-78812000 Strong transcription Fetal Stomach stomach
43 chr15:78807800-78811000 Weak transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015