Variant report

Variant	rs284381
Chromosome Location	chr7:121901823-121901824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11972442	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979786	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12706390	1.00[CEU][hapmap]
rs12706399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13231553	0.84[EUR][1000 genomes]
rs1663006	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1697517	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2134057	0.85[CEU][hapmap]
rs284353	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs284354	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs284355	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs284393	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs284394	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs505005	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs627355	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs627845	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs628339	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs673757	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs675027	1.00[CEU][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024364	chr7:121843701-121916791	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1020645	chr7:121843701-121929598	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1034945	chr7:121843701-121933166	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121899200-121902800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:121900200-121902600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:121900200-121902800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:121900400-121902600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:121900400-121902800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:121900400-121902800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:121900600-121902000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:121901000-121902400	Weak transcription	Brain Germinal Matrix	brain
9	chr7:121901000-121902800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:121901600-121902000	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr7:121901600-121902400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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