Variant report

Variant	rs284388
Chromosome Location	chr7:121895203-121895204
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10230768	1.00[EUR][1000 genomes]
rs12669983	0.81[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12671513	1.00[EUR][1000 genomes]
rs12674287	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2586973	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs284344	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs284348	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs284367	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs284378	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs600605	0.91[YRI][hapmap]
rs659022	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs672483	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6947948	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034624	chr7:121813180-121899703	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1034797	chr7:121815255-121897109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028221	chr7:121818974-121899162	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1024868	chr7:121818974-121899703	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1024364	chr7:121843701-121916791	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1020645	chr7:121843701-121929598	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1034945	chr7:121843701-121933166	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121894600-121895400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:121894800-121895400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:121894800-121896400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:121894800-121896800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:121895000-121895400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:121895000-121896000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr7:121895000-121896400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:121895200-121895600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:121895200-121896000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:121895200-121896400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:121895200-121896600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:121895200-121896800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links