Variant report

Variant	rs28439679
Chromosome Location	chr2:152525750-152525751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:152524436..152526394-chr2:152528690..152531514,2	K562	blood:
2	chr2:152524436..152527296-chr2:152527815..152531514,4	K562	blood:
3	chr2:152524660..152526249-chr2:152545100..152547655,2	K562	blood:
4	chr2:152525703..152527793-chr2:152563733..152565410,2	K562	blood:

Variant related genes	Relation type
ENSG00000183091	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12693088	0.94[AMR][1000 genomes]
rs13015723	0.88[AMR][1000 genomes]
rs13399785	0.86[AFR][1000 genomes]
rs35134482	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71415180	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv469804	chr2:152404429-152570882	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv482520	chr2:152404429-152570882	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152504400-152531600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:152505200-152543600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:152511200-152531200	Strong transcription	Fetal Muscle Trunk	muscle
4	chr2:152511400-152531400	Strong transcription	Fetal Muscle Leg	muscle
5	chr2:152511600-152525800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:152514600-152542800	Strong transcription	HSMMtube	muscle
7	chr2:152515400-152529000	Weak transcription	Aorta	Aorta
8	chr2:152520400-152528600	Weak transcription	Brain Anterior Caudate	brain
9	chr2:152521600-152537800	Weak transcription	Psoas Muscle	Psoas
10	chr2:152522200-152526000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr2:152522600-152527400	Weak transcription	Spleen	Spleen
12	chr2:152522800-152525800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:152523400-152526400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr2:152525200-152526000	Weak transcription	Lung	lung
15	chr2:152525200-152526600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:152525400-152526200	Enhancers	K562	blood
17	chr2:152525400-152526400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:152525400-152527200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr2:152525400-152527400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr2:152525400-152530000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
21	chr2:152525600-152526600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:152525600-152526600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr2:152525600-152527200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr2:152525600-152527800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr2:152525600-152533000	Genic enhancers	Skeletal Muscle Female	skeletal muscle

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