Variant report
| Variant | rs28441660 |
|---|---|
| Chromosome Location | chr4:150075716-150075717 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-DCLK2-3 | chr4:150075447-150075771 | NONHSAT098714 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1000259 | 0.93[EUR][1000 genomes] |
| rs1020114 | 0.94[EUR][1000 genomes] |
| rs11099716 | 0.94[EUR][1000 genomes] |
| rs1438768 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1438770 | 0.94[EUR][1000 genomes] |
| rs1438782 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1438783 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1438785 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1438786 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1438787 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1866401 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2196765 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs28485624 | 0.90[EUR][1000 genomes] |
| rs7679928 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7681647 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs965921 | 0.94[EUR][1000 genomes] |
| rs965922 | 0.94[EUR][1000 genomes] |
| rs979227 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880247 | chr4:150057979-150159936 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1022438 | chr4:150066349-150196711 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv595687 | chr4:150070596-150178533 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
