Variant report

Variant	rs28444239
Chromosome Location	chr15:50278960-50278961
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50277715..50280459-chr15:50288291..50290867,2	MCF-7	breast:
2	chr15:50275595..50278547-chr15:50278669..50281707,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28694493	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904205	chr15:50228476-50286981	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50268600-50281000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:50268600-50290400	Strong transcription	Primary hematopoietic stem cells	blood
3	chr15:50273200-50280000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:50274800-50279400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:50275000-50281000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:50275400-50283200	Weak transcription	NHLF	lung
7	chr15:50276800-50281200	Weak transcription	Left Ventricle	heart
8	chr15:50277200-50279400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:50277400-50279600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:50277600-50279200	Enhancers	Stomach Smooth Muscle	stomach
11	chr15:50277600-50282200	Enhancers	Fetal Stomach	stomach
12	chr15:50277600-50282400	Enhancers	Ovary	ovary
13	chr15:50277800-50279000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr15:50277800-50279000	Genic enhancers	Monocytes-CD14+_RO01746	blood
15	chr15:50277800-50280400	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr15:50278000-50281200	Weak transcription	Right Atrium	heart
17	chr15:50278000-50301600	Weak transcription	Liver	Liver
18	chr15:50278200-50279600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:50278400-50283800	Enhancers	Rectal Smooth Muscle	rectum
20	chr15:50278400-50285000	Enhancers	Colon Smooth Muscle	Colon
21	chr15:50278600-50279000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:50278800-50279200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr15:50278800-50281600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links